SustainPineDB

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Assembly info
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SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65581

Length: 335 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65581
CGTCGTGACCTTGGCTGTCACTCAATTTAGGTTTTCTTTATTAGATGAGAAACTCAGAGTAGCTTACAAAGCCACCACAGAGGGGAAGTTTAGTGAAGCATTGAGGTTACGTCGTGACCTTGGCTGTCACTCATTATTGTTGTAGATTCAAGAAGGGAGGTTGATGAAGTGAAGGAATTGATTGGAATTGCTAAAGAATATGTTCTGGGTCTTCGGATGGAGGTCAAGAGAAAGGAAGTTAAGGATGATGCTGTTCGACAGCAAGAGCTTGCAGCCTACTTTACTCATTGCAACCTTCAAAAGGTCCATTTGAGGTTGGCTTTGCTGAATGCCAT

Ace file of the UniGene sp_v1.1_unigene65581

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9SU35_RICCO	-	-	3.0e-29	83%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	coatomer alpha	-	-	3.26478e-30	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.26478e-30	90%
Blast2go	transport	GO:0006810	Biological Process	3.26478e-30	90%
Blast2go	protein binding	GO:0005515	Molecular Function	3.26478e-30	90%
Blast2go	protein complex	GO:0043234	Cellular Component	3.26478e-30	90%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	3.26478e-30	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.26478e-30	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Overlapping hits, possible frame ERROR between 160 and 133, Distance to subject end: 115 aas, your sequence is shorter than subject: 111 - 1216

Fln protein: VVTLAVTQFRFSLLDEKLRVAYKATTEGKFSEALRLRRDLGCHxxxxxxxxxxxDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNA

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTAGGTTTTCTTTATTAGATGAGAAACTCAGAGTAGCTTACAAAGCCACCACAGAGGGGAAGTTTAGTGAAGCATTGAGGTTACGTCGTGACCTTGGCTGTCACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGAAGTGAAGGAATTGATTGGAATTGCTAAAGAATATGTTCTGGGTCTTCGGATGGAGGTCAAGAGAAAGGAAGTTAAGGATGATGCTGTTCGACAGCAAGAGCTTGCAGCCTACTTTACTCATTGCAACCTTCAAAAGGTCCATTTGAGGTTGGCTTTGCTGAATGCCAT

Fln Alignment:

sp_v1.1_unigene65581___FRFSLLDEKLRVAYKATTEGKFSEALRLRRDLGCHSLLxxxxxxxREVDEVKELIGIAKEYVLGLRMEVKRKEVKDDAVRQQELAAYFTHCNLQKVHLRLALLNA
Q94A40_______________YDFSQLDEKLKSGYKATTTGKFTEALRLFLSI-LHTIPxxxxxxxREVDEVKELIVIVKEYVLGLQMELKRREMKDDPVRQQELAAYFTHCNLQTPHLRLALLSA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
110		75		25	0.99649
111			75	25	0.99649
116			75	25	0.99649
124			66	33	0.997452
127	33			66	0.997452
128		33	66		0.997452
129	33			66	0.997452
132	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain