SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65472

Length: 346 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene65472
CGTCGTGACCTTGGCTGTCACTCATTGGAAAGTCAATGATATTAGAACCTGAGAAAGAAAGCAAAGGAGGACTTCAAATCCCTGGAAAAGATAGAGTTATATTCAATGCTCCTTTGGAAGGCAAATCTGTTCTTGGATTGGATGCTCTGGCGCGTGCAAAGAAGGCATCAGCTAATGATGGGTCAAATTCAACAAAAAACACAACTCTTACAACCATGGCGGAGCTTGACACAGAAGAAAATCCTGTCTCTATTGGTGATGAAAATAATTCTGAAACTCTTCATCACAAAAGAGATAGTAAGGCAATGCGCAGATATCGAGGAACTCATGTTGAAGAAACTCCATA

Ace file of the UniGene sp_v1.1_unigene65472

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SMB4_RICCO	-	-	1.0e-06	38%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	36%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F2DYT0

Fln msg: Distance to subject end: 1148 aas, atg_distance in limit (1-15): atg_distance = 3, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 103 - 1263

Fln protein: MILEPEKESKGGLQIPGKDRVIFNAPLEGKSVLGLDALARAKKASANDGSNSTKNTTLTTMAELDTEENPVSIGDENNSETLHHKRDSKAMRRYRGTHVEETP

Protein Length: 104

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGAAAGTCA_-_ATGATATTAGAACCTGAGAAAGAAAGCAAAGGAGGACTTCAAATCCCTGGAAAAGATAGAGTTATATTCAATGCTCCTTTGGAAGGCAAATCTGTTCTTGGATTGGATGCTCTGGCGCGTGCAAAGAAGGCATCAGCTAATGATGGGTCAAATTCAACAAAAAACACAACTCTTACAACCATGGCGGAGCTTGACACAGAAGAAAATCCTGTCTCTATTGGTGATGAAAATAATTCTGAAACTCTTCATCACAAAAGAGATAGTAAGGCAATGCGCAGATATCGAGGAACTCATGTTGAAGAAACTCCATA

Fln Alignment:

sp_v1.1_unigene65472___LSLIGKSMILEPEKESKGGLQIPGKDRVIFNAPLEGKSVLGLDALARAKKASANDGSNSTK---NTTLTTMAELDTEENPVSIGDENNSETLHHKRDSKAMRRYRGTHVEE
F2DYT0_______________LDLDATTSTLGPEDDTAQGLILPIKDKVMYRPP-PGKSALGLDLLAHKKR--EKDGTNSFKRPPEKVVTAASSMDEDERPGS--TDNDASSLSGGDRGSVARRYRGTNSSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain