SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65423

Length: 336 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65423
CGTCGTGACCTTGGCTGTCACTCAATGTAGATTTCAGTCAAAGTGTGTCTAGACTGTGGAATCAGTATCGCCAGGCTGGTCGTGACCTTGGCTGTCATCACAAGGGAAAGGTCACGGGTGTTATAATTGTGGAGAACTAGATCACATTGCCAAGGAGTGTCCTAAGAATGTTGATCATAAACCCACAGATGCAGCTCCACAAAAGCCCAAATATGTCTTGAAAGATACTAATGGACAACTTGGAGATGTTGGAAAAAGCTATGATATGATTTTTGATGACAATTTGCCGGATGCCACCAAGACAAATTTCCGACATGAGGATAATATGCAGGGAAG

Ace file of the UniGene sp_v1.1_unigene65423

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8); K12735 peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8]	-	-	2.0e-07	43%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	66%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	3.87442e-11	59%

Source	ECs	Term	Type	e value	Identity
AutoFact	Peptidylprolyl isomerase.	EC:5.2.1.8	-	2.0e-07	43%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A9S3K5

Fln msg: Separated hits, possible frame ERROR between 83 and 110, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 26 aas, your sequence is shorter than subject: 111 - 388

Fln protein: S*PWLSLNVDFSQSVSRLWNQYRQAGxxxxxxxxxxGHGCYNCGELDHIAKECPKNVDHKPTDAAPQKPKYVLKDTNGQLGDVGKSYDMIFDDNLPDATKTNFRHEDNMQG

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTAGATTTCAGTCAAAGTGTGTCTAGACTGTGGAATCAGTATCGCCAGGCTGGTCGxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGTCACGGGTGTTATAATTGTGGAGAACTAGATCACATTGCCAAGGAGTGTCCTAAGAATGTTGATCATAAACCCACAGATGCAGCTCCACAAAAGCCCAAATATGTCTTGAAAGATACTAATGGACAACTTGGAGATGTTGGAAAAAGCTATGATATGATTTTTGATGACAATTTGCCGGATGCCACCAAGACAAATTTCCGACATGAGGATAATATGCAGGGAAG

Fln Alignment:

sp_v1.1_unigene65423___LNVDFSQSVSRLWNQYRQAGRxxxxxxxxxGHGCYNCGELDHIAKECPKNVDHKPTDAAPQKPKYVLKDTNGQLGDVGK
A9S3K5_______________IHVDFSQSVSHLWNRYRKLGKxxxxxxxxxGKGCFKCGEVGHFAKECPNN-GTEQKEGPTEKPKYTIKDTGGQRGHAHK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
78		50	50		1.0
80		50		50	1.0
81	50	50			1.0
84	50		50		1.0
86	50	50			1.0
88	50			50	1.0
90		50	50		1.0
91		50	50		1.0
92	50	50			1.0
93			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
78		50	50		1.0
80		50		50	1.0
81	50	50			1.0
84	50		50		1.0
86	50	50			1.0
88	50			50	1.0
90		50	50		1.0
91		50	50		1.0
92	50	50			1.0
93			50	50	1.0

Position	A %	C %	G %	T %	Probability
78		50	50		1.0
80		50		50	1.0
81	50	50			1.0
84	50		50		1.0
86	50	50			1.0
88	50			50	1.0
90		50	50		1.0
91		50	50		1.0
92	50	50			1.0
93			50	50	1.0

Position	A %	C %	G %	T %	Probability
78		50	50		1.0
80		50		50	1.0
81	50	50			1.0
84	50		50		1.0
86	50	50			1.0
88	50			50	1.0
90		50	50		1.0
91		50	50		1.0
92	50	50			1.0
93			50	50	1.0