SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65404

Length: 286 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65404
CGTCGTGACCTTGGCTGTCACTCAACAGATTTAGAAAAATTTAATGGCCTGTATATTTTCTTGGGTTGCTGTGACTTGTATCGGTTGGTTTGTCTGTCGCAGATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTAGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCC

Ace file of the UniGene sp_v1.1_unigene65404

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 2c, putative n=1 Tax=Ricinus communis RepID=B9SJV6_RICCO	-	-	3.0e-19	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	argonaute protein group	-	-	1.26129e-27	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Stem cell self-renewal protein Piwi	IPR003165	-	1.26129e-27	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACK3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 95 - 229

Fln protein: VVTLAVTQQI*KNLMACIFSWVAVTCIGWFVCRRYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPA

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGATTTAGAAAAATTTAATGGCCTGTATATTTTCTTGGGTTGCTGTGACTTGTATCGGTTGGTTTGTCTGTCGCAGATATGCGAGGTGCACACGGTCAGTTTCTATAGTACCCCCAGCGTATTATGCCCATCTAGCTGCATTTCGGGCTCGGTTTTATATGGAGCCAGAAACATCAGATAGTGGTTCCTTATCTAGTGGTGTTCCTGGTAGTCGCATGACTGCAGCTAGTTCAGGTTCTCGGAGCACTCGTGTACCTGCC

Fln Alignment:

sp_v1.1_unigene65404___VCRRYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPA
D5ACK3_______________LCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSLSSGVPGSRMTAASSGSRSTRVPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain