SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65273

Length: 842 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene65273

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cak1, putative n=1 Tax=Ricinus communis RepID=B9RKN1_RICCO	-	-	9.00054e-42	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	cdk-activating kinase cak1at	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	75%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	75%
Blast2go	cyclin-dependent protein kinase activating kinase activity	GO:0019912	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	cytosol	GO:0005829	Cellular Component	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR21

Fln msg: Separated hits, possible frame ERROR between 349 and 354, Unexpected STOP codon at 3' end. Distance to subject end: 166 aas, your sequence is shorter than subject: 267 - 433

Fln protein: MQNMEDNVKSSWSLHGNKEICARYKIIERVGSGAYSDV*RGRKKEGGLILALKEVHDYQSYWR*IEALQRLCGCHNVVRPYEWFWRENEDAVLVLEFLRSLVSSVxxxSSKNKEENGIPEAEVKAWMIQILQGLADCHANWVIHRDLKPSNLLISADEILKLADFGQARILEELEAIYEVEYELPQEDIVADGRGERLMEEDDSVKGVRNEAEEDSSTAIENHFDDMAEIVNLDLSWKMKVIW*CRDSHLVLELDGTKLWSFSMEQ*

Protein Length: 268

Fln nts: GATGGGAACAGGTCTTCCGGAGATTTGAGGA_-_ATGCAAAACATGGAGGACAATGTGAAGAGCAGTTGGAGTCTCCATGGCAACAAAGAAATATGTGCTCGTTACAAGATTATAGAGAGGGTCGGCAGTGGAGCTTATTCAGATGTCTAAAGAGGTCGAAAAAAGGAGGGCGGTCTAATATTAGCCCTTAAGGAGGTGCATGACTATCAAAGCTATTGGAGATAGATTGAGGCACTGCAGAGGCTTTGTGGGTGCCACAATGTTGTGAGGCCATATGAGTGGTTTTGGAGAGAAAATGAAGACGCAGTTCTAGTTTTGGAGTTTCTTCGTTCCCTTGTCTCGTCGGTCCTxxxxxxGTCTTCTAAGAATAAGGAAGAAAATGGTATTCCTGAGGCCGAGGTTAAGGCCTGGATGATTCAGATCTTGCAAGGGCTGGCTGACTGCCATGCCAATTGGGTTATCCATCGTGACCTAAAGCCCTCTAATCTTCTGATTTCGGCTGATGAAATTCTCAAGCTCGCAGATTTTGGACAGGCAAGGATACTTGAAGAGCTTGAAGCGATCTATGAAGTAGAGTATGAGCTTCCTCAAGAGGACATCGTTGCTGATGGCCGAGGAGAAAGGTTGATGGAGGAAGATGATAGTGTTAAGGGAGTGCGGAATGAAGCTGAGGAGGATTCATCCACTGCAATTGAAAATCATTTTGATGATATGGCAGAAATTGTGAATTTGGATTTGAGCTGGAAAATGAAGGTGATATGGTGATGCAGGGATTCACATCTGGTGTTGGAACTCGATGGTACAAAGCTCTGGAGTTTCTCTATGGAGCAATAATATATGCAAAAT

Fln Alignment:

sp_v1.1_unigene65273___MEDNVKSSWSLHGNKEICARYKIIERVGSGAYSDV*RGRKKEGGLILALKEVHDYQSYWR*IEALQRLCGCHNVVRPYEWFWRENEDAVLVLEFLRSLVSSVLxxSSKNKEENGIPEAEVKAWMIQILQGLADCHANWVIHRDLKPSNLLISADEILKLADFGQARXXXXXXXXXXXXXXXPQEDIVADGRGERLMEEDDSVKGVRNEAEEDSSTAIENHFDDMAEIVNLDLSWK
B8LR21_______________MEDNVQSSWSLHGNKEICARYEILERVGSGTYSDVYRGRRKEDGLIVALKEVHDYQSSWREIEALQRLSGCPNVVRLYEWFWRENEDAVLVLEFLPSDLYSVIxxSAKNKGENGIAEAEVKAWMIQILQGLADCHANWVIHRDLKPSNLLISADGILKLADFGQARILEEPATIYQEEYELPQVDIVADAPGERLIDEYDSVKGVWNEGEEGSPTAIETNFDDTSETGNLDLSWK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
494	80	20			0.995498
503	20		80		0.995498
507	75	25			0.996473
521		25		75	0.996473
525	75			25	0.996473
533	25		75		0.996473
558	25			75	0.996473
591		80		20	0.995505
601		75		25	0.996473
615		33	66		0.997452
616		66		33	0.997452
618		33	66		0.997452
626	75			25	0.99649
668			66	33	0.997452
672		66	33		0.997452
673			33	66	0.997452
695	66		33		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain