SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65206

Length: 490 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene65206
CGTCGTGACCTTGGCTGTCACTCACCATGGATGATGCTGGTCTAGAGAAGAATCAGATTGATGAGATTGTTCTTGTTGGTGGAAGTACCCGTATTCCTAAAGTTCAGCAACTGCTCAAGGATTTCTTTGATGGTAAAGAGCCAAACAAGGGTGTAAACCCTGATGAGGCCGTTGCATTTGGTGCAGCAGTGCAAGGTAGCATTCTTAGTGGAGAAGGTGGAGAAGAAACTAAAGAAATACTTTTACTGGATGTGGCTCCTCTAACCTTGGGTATTGAGACTGTTGGTGGAGTGATGACAAAGCTAATTCCAAGGAACACTGTTATTCCTACAAAGAAGTCTCAGGTGTTTACAACCTATCAGGACCAACAAACAACCGTGTCCATTGAGGTTGGTCTAAAATCTTTTATATCGTTCTTCTAAAAACTTTCTGATGGGTTATTTCAATTTTTACAATAGCATGAGCGTAGGGAGGCTGATTGACTGAGCCA

Ace file of the UniGene sp_v1.1_unigene65206

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein, putative (EC:1.3.1.74); K09490 heat shock 70kDa protein 5	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	luminal binding protein	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to endoplasmic reticulum stress	GO:0034976	Biological Process	99%
Blast2go	polar nucleus fusion	GO:0010197	Biological Process	99%
Blast2go	response to heat	GO:0009408	Biological Process	99%
Blast2go	metabolic process	GO:0008152	Biological Process	99%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	99%
Blast2go	cell wall	GO:0005618	Cellular Component	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	99%
Blast2go	plasma membrane	GO:0005886	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	99%
Blast2go	Heat shock protein 70	IPR013126	-	99%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	99%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV08

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 158 aas, your sequence is shorter than subject: 140 - 396

Fln protein: S*PWLSLTMDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGEETKEILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIEVGLKSFISFF*

Protein Length: 141

Fln nts: CGTCGTGACCTTGGCTGTCACTCACCATGGATGATGCTGGTCTAGAGAAGAATCAGATTGATGAGATTGTTCTTGTTGGTGGAAGTACCCGTATTCCTAAAGTTCAGCAACTGCTCAAGGATTTCTTTGATGGTAAAGAGCCAAACAAGGGTGTAAACCCTGATGAGGCCGTTGCATTTGGTGCAGCAGTGCAAGGTAGCATTCTTAGTGGAGAAGGTGGAGAAGAAACTAAAGAAATACTTTTACTGGATGTGGCTCCTCTAACCTTGGGTATTGAGACTGTTGGTGGAGTGATGACAAAGCTAATTCCAAGGAACACTGTTATTCCTACAAAGAAGTCTCAGGTGTTTACAACCTATCAGGACCAACAAACAACCGTGTCCATTGAGGTTGGTCTAAAATCTTTTATATCGTTCTTCTAAAAACTTTCTGATGGGTTATTTCAATTTTTACAATAGCATGAGCGTAGGGAGGCTGATTGACTGAGCCA

Fln Alignment:

sp_v1.1_unigene65206___MDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGEETKEILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIEV
A9NV08_______________MDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGEETKEILLLDVAPLTMGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
93	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain