SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65093

Length: 286 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65093
CGTCGTGACCTTGGCTGTCACTCAACTTTAGACTCAGAAGGATGGCTGAAAACTGGGGATCTTTGTTACCTTGCTGAGTCGGGTTTCCTTTTCATTGTGGACAGAATAAAAGAGTTGATCAAGTACAAAGCGTATCAGGTTGCACCGGCAGAGTTAGAGGAGTTGCTCCTCTCAAACGTAGAGATTAGTGATGCTGCTGTTATTCCGTATCCTGATGATGAAGCAGGTCAAATACCAATGGCATTTATTGTGAGGAAGTCTGACAGCAATCTCTCCGAAGAAGATA

Ace file of the UniGene sp_v1.1_unigene65093

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO	-	-	2.0e-32	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	acyl:coa ligase	-	-	7.12887e-39	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	7.12887e-39	87%
Blast2go	response to wounding	GO:0009611	Biological Process	7.12887e-39	87%
Blast2go	catalytic activity	GO:0003824	Molecular Function	7.12887e-39	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	7.12887e-39	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	7.12887e-39	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7S8

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 95 - 163

Fln protein: RRDLGCHSTLDSEGWLKTGDLCYLAESGFLFIVDRIKELIKYKAYQVAPAELEELLLSNVEISDAAVIPYPDDEAGQIPMAFIVRKSDSNLSEED

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTAGACTCAGAAGGATGGCTGAAAACTGGGGATCTTTGTTACCTTGCTGAGTCGGGTTTCCTTTTCATTGTGGACAGAATAAAAGAGTTGATCAAGTACAAAGCGTATCAGGTTGCACCGGCAGAGTTAGAGGAGTTGCTCCTCTCAAACGTAGAGATTAGTGATGCTGCTGTTATTCCGTATCCTGATGATGAAGCAGGTCAAATACCAATGGCATTTATTGTGAGGAAGTCTGACAGCAATCTCTCCGAAGAAGATA

Fln Alignment:

sp_v1.1_unigene65093___STLDSEGWLKTGDLCYLAESGFLFIVDRIKELIKYKAYQVAPAELEELLLSNVEISDAAVIPYPDDEAGQIPMAFIVRKSDSNLSEED
D5A7S8_______________SALDTEGWLKTGDLCYIEEEGFLFVVDRIKELIKYKAFQVAPAELEELLLSNQEISDAAVIPYPDDEAGQIPMAFVVRKSDSNLSEED

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
150	33		66		0.997476
151			66	33	0.997458
154	66			33	0.997458
157		33	66		0.997454
158		33		66	0.997454
160	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain