SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65073

Length: 342 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene65073
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGGAAGGCTGTCTGATTGGTCCTGATGTTTCTATAGGTCCAGGCTGTATAATTGAAGCTGGGGTAAGACTCTCAAATTGTGCAATTATGAGGGGTGTTAGAATCAAGAAGCATGCCTGTGTCTCATGGAGCATAGTTGGCTGGCATTCAACAGTTGGACAGTGGGCTAGGGTAGAGAATATGACTATTTTAGGTGAGGATGTGCATATAAGTGATGAGATATACAGTAATGGTGGTGTGGTGCTACCTCATAAAGAGATCAAATCTAACATTCTCAAGCCTGAGATTGTCATGTG

Ace file of the UniGene sp_v1.1_unigene65073

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose pyrophosphorylase n=4 Tax=Pinaceae RepID=A6N835_PINTA	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	gdp-mannose pyrophosphorylase	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mannose-1-phosphate guanylyltransferase.	EC:2.7.7.13	-	0.0	95%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	95%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	95%
Blast2go	Metabolic pathways	01100	95%
Blast2go	Biosynthesis of secondary metabolites	01110	95%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	95%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	95%
Blast2go	response to ammonium ion	GO:0060359	Biological Process	95%
Blast2go	response to ozone	GO:0010193	Biological Process	95%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	95%
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	95%
Blast2go	response to heat	GO:0009408	Biological Process	95%
Blast2go	response to salt stress	GO:0009651	Biological Process	95%
Blast2go	mannose-1-phosphate guanylyltransferase activity	GO:0004475	Molecular Function	95%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ27

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 113 - 361

Fln protein: VVTLAVTPS*PWLSLREGCLIGPDVSIGPGCIIEAGVRLSNCAIMRGVRIKKHACVSWSIVGWHSTVGQWARVENMTILGEDVHISDEIYSNGGVVLPHKEIKSNILKPEIVM

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTCAGGGAAGGCTGTCTGATTGGTCCTGATGTTTCTATAGGTCCAGGCTGTATAATTGAAGCTGGGGTAAGACTCTCAAATTGTGCAATTATGAGGGGTGTTAGAATCAAGAAGCATGCCTGTGTCTCATGGAGCATAGTTGGCTGGCATTCAACAGTTGGACAGTGGGCTAGGGTAGAGAATATGACTATTTTAGGTGAGGATGTGCATATAAGTGATGAGATATACAGTAATGGTGGTGTGGTGCTACCTCATAAAGAGATCAAATCTAACATTCTCAAGCCTGAGATTGTCATGTG

Fln Alignment:

sp_v1.1_unigene65073___EGCLIGPDVSIGPGCIIEAGVRLSNCAIMRGVRIKKHACVSWSIVGWHSTVGQWARVENMTILGEDVHISDEIYSNGGVVLPHKEIKSNILKPEIVM
B8LQ27_______________EGCLIGPDVAIGPGCVVEAGVRLSRCTIMRGVRIKKHACVSGSIIGWHSTVGQWARVENMTILGEDVHVSDEVYSNGGVVLPHKEIKSSILKPEIVM

SNPs (tot: 4)

Position	A %	C %	T %	Probability
24	33	66		0.997471
27		66	33	0.997471
33	33	66		0.997476
34	33	66		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain