SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene65028

Length: 408 nt

Origin of reads: Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene65028
CGTCGTGACCTTGGCTGTCACTCATTAGTATCGAAGGAACTCTTGCTGGGTTAGTTGCATCCGTCGTGACCTTGGCTGTCACTTGCTGTCTTATGGGTCAGGTAGATAATGCCGGAGCTATAATTTGTGTTATTTCTTCTCAGCTGGCAAATGTTCTTGAAAGTCAAATTGGCGCTTCTTTGCAAGACAAAGAAGGTTTTAAATGGTTTCCGCTCTGGCTCCACTATCGCCCTCTTCTGAACCTTGTTTGTCTTCAATTTGTGTACACCCGCCGCCATTTGAATATGGTTCACCCATATCAGCATGTTGTCGAGCCGTGCAATAGAAAAACAGTAGATGGAACAATTGTTGTTCCAAAGTCAAAACAATAGAAGCTATTTAAGGGAAATGAGGCGCGTCATGTGCGGT

Ace file of the UniGene sp_v1.1_unigene65028

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to integral membrane family protein	-	-	3.0e-12	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	integral membrane family protein	-	-	1.4624e-20	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	1.4624e-20	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNB3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 123 - 315

Fln protein: S*PWLSLISIEGTLAGLVASVVTLAVTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKWFPLWLHYRPLLNLVCLQFVYTRRHLNMVHPYQHVVEPCNRKTVDGTIVVPKSKQ*

Protein Length: 124

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTAGTATCGAAGGAACTCTTGCTGGGTTAGTTGCATCCGTCGTGACCTTGGCTGTCACTTGCTGTCTTATGGGTCAGGTAGATAATGCCGGAGCTATAATTTGTGTTATTTCTTCTCAGCTGGCAAATGTTCTTGAAAGTCAAATTGGCGCTTCTTTGCAAGACAAAGAAGGTTTTAAATGGTTTCCGCTCTGGCTCCACTATCGCCCTCTTCTGAACCTTGTTTGTCTTCAATTTGTGTACACCCGCCGCCATTTGAATATGGTTCACCCATATCAGCATGTTGTCGAGCCGTGCAATAGAAAAACAGTAGATGGAACAATTGTTGTTCCAAAGTCAAAACAATAG___AAGCTATTTAAGGGAAATGAGGCGCGTCATGTGCGGT

Fln Alignment:

sp_v1.1_unigene65028___ISIEGTLAGLVASVVTLAVTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKW
A9NNB3_______________VSIEGTLAGLVASIL-LAYTCCLMGQVDGVGAIICVISSQLANIFESQIGASFQDKEGFKW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain