SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64977

Length: 628 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene64977

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl transferase family 8 protein-like n=2 Tax=Oryza sativa RepID=Q652K2_ORYSJ	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	glycosyl transferase family 8	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	93%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	93%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	93%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	93%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	0.0	93%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
262		16		83	0.994512
482			25	75	0.996477
484	50		25		0.995533
485		66	33		0.997452
488			25	75	0.99649
490			25	75	0.99649
495	66		33		0.997452
497		25		75	0.996476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain