SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64968

Length: 489 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene64968
GCAGAGAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCAATTTCAGGGTGCACTGTCGTTTCTCAGTTGATCGAGTTTAAAAGCTGCGAGGGATTTCATCATACGCCATAGTTTCCTCTCTGTGCAAATGGCGGAGCAGTTGACCGAGGATCAGATCGCAGAGTTCAAGGAGGCTTTCAGTCTGTTTGACAAAGATGGCGATGGCTGCATTACTACCAAAGAATTGGGTACTGTTATGCGCTCTCTAGGACAGAATCCAACTGAAGCTGAACTTCAGGACATGATCAGTGAAGTTGATGCTGATGGTAATGGGACAATTGATTTTCCAGAGTTCCTGAACCTTATGGCTCGAAAGATGAAGGATACTGACTCAGAGGAAGAGTTGAAAGAGGCCTTCAAGGTTTTTGACAAGGATCAAAATGGTTTCATATCTGCCGCAGAGCTGCGGCATGTGATGACCAAC

Ace file of the UniGene sp_v1.1_unigene64968

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin-7 n=145 Tax=Eukaryota RepID=CALM7_ARATH	-	-	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	calmodulin	-	-	99%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	99%
Blast2go	EF-hand-like domain	IPR011992	-	99%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	99%
Blast2go	EF-hand	IPR018248	-	99%
Blast2go	EF-HAND 2	IPR018249	-	99%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRI1

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 112 - 149

Fln protein: MAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTN

Protein Length: 113

Fln nts: GCAGAGAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCAATTTCAGGGTGCACTGTCGTTTCTCAGTTGATCGAGTTTAAAAGCTGCGAGGGATTTCATCATACGCCATAGTTTCCTCTCTGTGCAA_-_ATGGCGGAGCAGTTGACCGAGGATCAGATCGCAGAGTTCAAGGAGGCTTTCAGTCTGTTTGACAAAGATGGCGATGGCTGCATTACTACCAAAGAATTGGGTACTGTTATGCGCTCTCTAGGACAGAATCCAACTGAAGCTGAACTTCAGGACATGATCAGTGAAGTTGATGCTGATGGTAATGGGACAATTGATTTTCCAGAGTTCCTGAACCTTATGGCTCGAAAGATGAAGGATACTGACTCAGAGGAAGAGTTGAAAGAGGCCTTCAAGGTTTTTGACAAGGATCAAAATGGTTTCATATCTGCCGCAGAGCTGCGGCATGTGATGACCAAC

Fln Alignment:

sp_v1.1_unigene64968___FLSVQMAEQLTEDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLNLMARK
A9NRI1_______________FLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVRMMLAK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
259		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain