SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64922

Length: 272 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene64922
ATGGGTCCCCATTCACAGAGACCAATAACTCGGTGGCCTTTCTTAGTGTTCCTCGGAGCTGCAACATATTGCCTTTTTGCGAGTGGCAGTCGTCGTGTGCTTGGCTGTCACTCAAGACTTTACTACATTATGTTAAGACTTGATTATTCAGGAATTGTGGCCTTGATAGCTGCATCTTTTTATCCTCCTGTCTACTATTCGTTCATGTGTGCTCCTTTCTTTAGAAAAATATACTTGACTGCAATCACTTTGCTTGGGATTGCAACCATTCT

Ace file of the UniGene sp_v1.1_unigene64922

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HHP4; HHP4 (heptahelical protein 4); receptor	-	-	3.0e-27	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	1.07961e-39	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	1.07961e-39	77%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	1.07961e-39	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Hly-III-related	IPR004254	-	1.07961e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP50

Fln msg: Distance to subject end: 115 aas, your sequence is shorter than subject: 90 - 355

Fln protein: MGPHSQRPITRWPFLVFLGAATYCLFASGSRRVLGCHSRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKIYLTAITLLGIATI

Protein Length: 91

Fln nts: ATGGGTCCCCATTCACAGAGACCAATAACTCGGTGGCCTTTCTTAGTGTTCCTCGGAGCTGCAACATATTGCCTTTTTGCGAGTGGCAGTCGTCGTGTGCTTGGCTGTCACTCAAGACTTTACTACATTATGTTAAGACTTGATTATTCAGGAATTGTGGCCTTGATAGCTGCATCTTTTTATCCTCCTGTCTACTATTCGTTCATGTGTGCTCCTTTCTTTAGAAAAATATACTTGACTGCAATCACTTTGCTTGGGATTGCAACCATTCT

Fln Alignment:

sp_v1.1_unigene64922___PHSQRPITRWPFLVFLGAATYCLFASGSRRVLGCHS-RLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKIYLTAITLLGIATI
A9NP50_______________PHSQRPITRWPFLVFLGAATYCLFASATFHLLSCHSKRLYYIMLRLDYSGIVALIAASFYPPVYYSFMCAPFFRKLYLTAITLLGIATV

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
92		50	25	25	0.995595
93	25		50	25	0.995595
94		25	25	50	0.995582
96	50		50		1.0
97	25	25		50	0.995582
98			66	33	0.997452
99	50			50	1.0
100		50	50		1.0
102			33	66	0.997452
103	33	33		33	0.997753
104	33		33	33	0.997753
105	33	33	33		0.997753
106	33	33	33		0.997753
109		33	33	33	0.997753
114		66	33		0.997452
123			20	80	0.995497
125		20		80	0.995497
126	80		20		0.995496
127		80		20	0.995496
128			20	80	0.995495
131	80	20			0.995495
135		20	20	60	0.99255
137		20		80	0.995493
138		16		83	0.994514
139	60		40		1.0
140	60			40	1.0
141		20	80		0.995493
146		20		80	0.995493
148	20		80		0.995493
149	80	20			0.995493
155		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain