SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64855

Length: 504 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene64855
CGTCGTACCTTGCTGTCCTCATGTTTTATGACTGGAATGTTTCTTACATTGAAGCTGCCCCTCTGGGTGTGAAGCAGCAGGTGATTGCAATTAATGGGCAGTTTCCTGGACCCTTGGTGAACTTGACAACCAATTGGAATGCCGTCGTGACCTTGGCTGTCACTCAAATTTGGATGAGCCATTTCTGATCACCTGGAATGGTTTGCAAAATCGCAGAAATTCTTGGCAAGATGGTGTATCTGGGACCAATTGTCCTATTCCGGCAGGATGGAACTGGACCTATAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACTCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGATTGGTATACAAGGAGTCATACAGATCTGCGAGCAGCCCTTGATGCTGGCAAGGACCTTG

Ace file of the UniGene sp_v1.1_unigene64855

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multicopper oxidase, type 1 n=1 Tax=Medicago truncatula RepID=A2Q4H7_MEDTR	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	protein sku5 similar 3	-	-	2.20333e-40	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	2.20333e-40	88%
Blast2go	Multicopper oxidase, type 3	IPR011707	-	2.20333e-40	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRE4

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 406 aas, your sequence is shorter than subject: 167 - 591

Fln protein: SYLAVLMFYDWNVSYIEAAPLGVKQQVIAINGQFPGPLVNLTTNWNAVVTLAVTQIWMSHF*SPGMVCKIAEILGKMVYLGPIVLFRQDGTGPIIFRPRIRLVASFTFLPFTFRGQQEGLVELL*TIVQ*FLYSFGTPDGDFTIFIGDWYTRSHTDLRAALDAGKDL

Protein Length: 168

Fln nts: CGTCGTACCTTGCTGTCCTCATGTTTTATGACTGGAATGTTTCTTACATTGAAGCTGCCCCTCTGGGTGTGAAGCAGCAGGTGATTGCAATTAATGGGCAGTTTCCTGGACCCTTGGTGAACTTGACAACCAATTGGAATGCCGTCGTGACCTTGGCTGTCACTCAAATTTGGATGAGCCATTTCTGATCACCTGGAATGGTTTGCAAAATCGCAGAAATTCTTGGCAAGATGGTGTATCTGGGACCAATTGTCCTATTCCGGCAGGATGGAACTGGACCTATAATTTTCAGGCCAAGGATCAGATTGGTAGCTTCTTTTACTTTCCTTCCCTTCACTTTCAGAGGGCAGCAGGAGGGTTTGGTGGAGTTATTGTGAACAATCGTCCAGTGATTCCTGTACTCCTTTGGAACTCCCGATGGAGATTTCACAATCTTTATTGGTGATTGGTATACAAGGAGTCATACAGATCTGCGAGCAGCCCTTGATGCTGGCAAGGACCTTG

Fln Alignment:

sp_v1.1_unigene64855___MFYDWNVSYIEAAPLGVKQQVIAINGQFPGPLVNLTTNWNAVVTLAVTQIWMSHF*SPGMVCKIAEILGKMVYLGPIVLFRQDGTG----PI--------IFRPRIRLVASFTFLPFTFRGQQEGLVELL*TIVQ*FLYSFGTPDGDFTIFIGDWYTRSHTDLRAALDAGKDL
C0PRE4_______________VFYDWNVSYIEAAPLGVKQQVIAINGQFPGPLVNLTTNWNAAVNV------MNNLDEPLLITWNGLQNRRNSW--------QDGVSGTNCPIPVGWNWTYNFQAKDQIGSFFYFPSLHFQRAAGGFGGVIVNNRAVIPVPFGTPDGDLTIFIGDWYTRSHKDLRAALDAGKDL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
192	80			20	0.995498
194		80	20		0.995498
197	20		60		0.99255
198	50	50			1.0
199	80	20			0.995499
201			75	25	0.996473
203			25	75	0.996473
204		25		75	0.996473
209	80			20	0.995505
210	80	20			0.995505
212	80	20			0.995505
216	25	75			0.996473
219	75			25	0.996473
390		66	33		1.0
391	66			33	1.0
393	33			66	1.0
394		33	66		1.0
395	66	33			1.0
399		66	33		1.0
409	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain