SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64751

Length: 950 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64751 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CIPK16; CBL-interacting protein kinase 16	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	serine-threonine kinase	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	73%
Blast2go	NAF domain	IPR004041	-	73%
Blast2go	Protein kinase-like domain	IPR011009	-	73%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	73%
Blast2go	NAF/FISL domain	IPR018451	-	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 297 - 431

Fln protein: WGVCITVT*S*RTCY*TTTVTSRSATSGSARCRNNGKDGLLHTACGTPNYVAPEVITMKGYEGAKADIWSCGVILFVLLAGYLPFHDTNLIALYNKIRNSDFRFPSWFSADVRQLILRFLDPNPTTRITIPELMEVPWFRRGFKPSQPKKDTDVGLDLDTAFFVPKPAHLNAFDIISLSPAFNLSGLFEDKVAKQDFWFTSTQPASTIISKLEEIARVLRFSVKKSEDCKVKLQGSEQGRKGYLSLDAEISEVTRSLFLVELRKTGGDTLEYSKLCTQELRPGLKDIVWIWDGNRQ*

Protein Length: 298

Fln nts: ATGGGGGGTGTGTATCACCGTGACCTGAAGCTAGAGAACTTGTTATTAGACAACAACGGTGACCTCAAGGTCTGCGACTTCGGGCTCAGCGCGTTGCCGGAACAATGGGAAGGATGGCCTTCTCCACACGGCGTGCGGCACGCCGAATTATGTGGCGCCGGAGGTCATAACGATGAAGGGCTATGAGGGTGCCAAGGCCGACATCTGGTCGTGCGGTGTCATACTGTTCGTGCTCCTAGCGGGATACCTACCTTTCCATGACACGAATCTGATAGCCCTGTATAACAAGATCCGTAACAGTGACTTCAGGTTCCCGTCGTGGTTTTCCGCAGACGTCCGGCAGCTCATTCTCCGGTTTCTGGATCCCAACCCTACGACGAGGATCACCATCCCGGAGCTTATGGAGGTCCCCTGGTTTCGGCGCGGCTTCAAACCCTCTCAGCCCAAGAAAGATACTGATGTCGGCCTCGATCTCGACACAGCGTTCTTCGTTCCGAAACCCGCCCACCTCAACGCCTTTGACATCATTTCTCTGTCTCCGGCGTTCAATCTCTCCGGGCTGTTCGAGGACAAGGTCGCGAAGCAGGATTTCTGGTTCACTTCGACTCAGCCGGCGTCGACCATAATATCGAAGCTGGAGGAGATCGCCAGAGTCTTGAGATTCAGCGTCAAGAAGTCGGAGGATTGCAAGGTCAAGTTGCAGGGATCCGAACAAGGGCGGAAGGGATATTTATCACTGGACGCCGAGATTTCAGAAGTCACGCGCTCGCTTTTCCTAGTAGAGCTTCGCAAGACTGGGGGCGATACGCTCGAGTACAGTAAATTATGCACCCAAGAGCTACGGCCGGGTCTCAAAGACATTGTCTGGATATGGGATGGAAACCGTCAATAA___AATATACAAATTTATACTGTACATGGTTCATGTCCCTCTTCTTAAAAGCTTCCATGAA

Fln Alignment:

sp_v1.1_unigene64751___KDGLLHTACGTPNYVAPEVITMKGYEGAKADIWSCGVILFVLLAGYLPFHDTNLIALYNKIRNSDFRFPSWFSADVRQLILRFLDPNPTTRITIPELMEVPWFRRGFKPSQPKKDTDVGL--DLDTAFFVPKPAHLNAFDIISLSPAFNLSGLFEDKVAKQ--DFWFTSTQPASTIISKLEEIARVLRFSVKKSEDCKVKLQGSEQGRKGYLSLDAEISEVTRSLFLVELRKTGGDTLEYSKLCTQELRPGLKDIVWIWDGNRQ
D5A9K4_______________QDGLLHTACGTPAYVAPEVITKKGYDGATADIWSCGVILFVLMAGYLPFQDANLMVMYKKIYKGDYKCPPWFSSEVRRLVLRLLDPNPRTRITVPQLMEVPWFRRGFKRPQADKDVNVGVLDDVDSAFFVPKPACLNAFDIISLSPGFNLSGLFKDDVLKQEEESRFTSTQPASSIMSKLEEIASLFRFSFKKSKDFKMKLQGSEQGRKGHLSIDAEIFEVTPSFFMVELRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNRQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
613	83	16			0.994512
614		16	83		0.994512
768	33	66			0.997453
771		66		33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain