SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64736

Length: 901 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64736 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthocyanidin reductase n=1 Tax=Ginkgo biloba RepID=Q5XLY0_GINBI	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	anthocyanidin reductase	-	-	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT5

Fln msg: Distance to subject end: 47 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 255 - 342

Fln protein: SKPLDGPTGNEVKVRPLLDISGAAERLKLFKADLSEDGSFDAAVAGCQGVFHLATPIDFAPKDPENDVIKPAINGTLNVLKSCTKAQTVKRVVITSSAATVSINESTEQNQQLDESSWTDLDFLQTKKPPTWSYAVSKTLAEQAALQYGKEQGLDVVTIVPVLLVGPSILPDVPSSVHLALSLLTGNPHLLQAIKGMQLLSGSVSMVHVDDVCSAHIFLMDNPSATGRYICCPINTSVPQLADYLSKRYPQFAVS

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCGTCCTCTTATTCGAAAAGATTTATTCCTTTTCTATTTCTCGAAAATTAAAGCGATCTTCGTAGACTCAAAAGAAATCAAAGGCCTTAAACGAAATTCGCTAATTAATCAAAACCCTTGGATGGACCCACAGGGAACGAAGTGAAGGTGCGCCCTCTGCTGGACATTTCTGGAGCTGCAGAGAGGCTCAAGCTCTTTAAAGCGGATCTGTCGGAAGACGGCAGTTTCGACGCCGCCGTTGCCGGCTGCCAGGGCGTTTTTCATCTCGCCACTCCGATCGATTTCGCACCCAAAGATCCAGAGAATGATGTGATCAAGCCAGCGATCAACGGAACCCTTAATGTTCTGAAGTCTTGCACGAAGGCCCAAACCGTGAAACGCGTGGTGATCACATCGTCCGCGGCCACGGTTTCCATAAACGAATCAACGGAGCAGAATCAGCAGCTCGACGAATCCAGCTGGACAGACCTCGATTTCCTCCAAACTAAAAAGCCCCCCACCTGGTCATATGCAGTTTCCAAGACGCTGGCAGAGCAAGCAGCGCTGCAATACGGTAAAGAACAGGGGCTGGATGTCGTCACCATCGTCCCAGTGTTGCTGGTGGGCCCCTCCATCCTTCCCGACGTGCCGTCCAGCGTCCACCTGGCGCTCTCACTGCTTACTGGCAATCCCCACCTGTTGCAGGCTATTAAGGGCATGCAGTTGTTGTCCGGCTCCGTATCAATGGTACACGTGGACGACGTCTGTAGTGCACATATTTTCTTGATGGACAACCCCTCTGCAACGGGTCGCTACATCTGCTGTCCCATCAACACCTCCGTCCCACAGCTGGCAGACTACTTAtCCAAACGCTATCCGCAGTTCGCAGTGAGTGA

Fln Alignment:

sp_v1.1_unigene64736___NEVKVRPLLDISGAAERLKLFKADLSEDGSFDAAVAGCQGVFHLATPIDFAPKDPENDVIKPAINGTLNVLKSCTKAQTVKRVVITSSAATVSINESTEQNQQLDESSWTDLDFLQTKKPPTWSYAVSKTLAEQAALQYGKEQGLDVVTIVPVLLVGPSILPDVPSSVHLALSLLTGNPHLLQAIKGMQLLSGSVSMVHVDDVCSAHIFLMDNPSATGRYICCPINTSVPQLADYLSKRYPQFAV
B8LRT5_______________NEAKVRHLLDISGAAERLKLFRAELSEDGSYDAAVAGCHGVFHVATPIDFEPKDPENDVIKPAINGTLNVLKSCTKSKTVKRVVVTSSAATVSINESAEQNQYIDESCWTDVDFLQTKKPPTWSYPVSKTLAEQAALQYGKEQGLDVVTIIPVLVVGPSITPSVPSSVQLALSFLTGNPHTLQAIKGMQLVSGSVSLVHVDDVCSAHIFLMENPSAEGRHICCPINTSVPQLAKYLSKRYPQYNV

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
362	25	75			0.996473
363			25	75	0.996473
364	25		75		0.996473
368			25	75	0.996473
375		75		25	0.996473
378	25		75		0.996473
379		25	75		0.996473
383	25		75		0.99649
385	33		66		0.997452
386		33	66		0.997452
390		25		75	0.996474
392		25		75	0.996473
393		25		75	0.996473
394	75	25			0.996473
395		25	75		0.996473
396	25			75	0.996473
414	25			75	0.996473
416	25			75	0.996473
424	25			75	0.996473
427	75			25	0.996473
428		25		75	0.996473
429	25			75	0.996473
432	25			75	0.996473
496		66		33	0.997452
497		66	33		0.997452
500		66		33	0.997452
502	33	66			0.997452
503		33	66		0.997452
504	33			66	0.997467
505			33	66	0.997467
506		33		66	0.997471
509	33	66			0.997452
514		33		66	0.997453
515	33			66	0.997452
516		33	66		0.997452
518	33		66		0.997452
520		66	33		0.997452
775			25	75	0.996473
777	60		20		0.99255
778	75	25			0.996473
780		25	25	50	0.995533
783		75		25	0.996473
784		25	75		0.996473
789		20	20	60	0.992586
790		20	20	60	0.992586
791	25			75	0.996473
792	20	80			0.995498
794	20		20	60	0.992586
795		20		80	0.9955
796		20	20	60	0.992586
798	60	40			1.0
800	25		75		0.996479
802		75	25		0.996479
894	66			33	0.997461
899		66	33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain