SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64733

Length: 532 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene64733
GATAGATGCTGCATGGCAAGTTATTCAAATAGTGAACCAGGATGAAGGTGAAGCCAAAGATTGGGCTTGTGTGAGGAAGGAAGCCTTTCAGTCCGATAAGAATGAGTACTCCCACTTGTCAATTGCAGACTTTTCGGATTCTGTGCCAACCATCCCTCCAGAGGAAATCCGTCATATGATGGTGGATAGACCTGGAGTAGATGTTGAGCCAGATGCTCTTGGTGATCAACATCGACCTGGAGTAGATGTTGAGCCAGATGCTCTTGGTGATCAACATCACCAGCAAGGTCATCCTGGTAATTTGGAAAATGGTAATGCAGTGCTTATGTTTTTACAGTCTTTACTCCCTTGGGTGGACATTGGGGCTAATACCAATATTGACGAGCAAAGAGAAGTTGAGAATCCTGGCGAAGAAAATTGACGTAGTGTTAAGACTATCTCCACTATATTCCAGTCGATTTAGTATTCATTGGAAATAATTCTTTTACAGGCTATTTTCCATTATTAAGTTCCATATTAATACCACTGCAAT

Ace file of the UniGene sp_v1.1_unigene64733 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	uncharacterized protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription factor 25	IPR006994	-	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE2

Fln msg: your sequence is shorter than subject: 140 - 637

Fln protein: IDAAWQVIQIVNQDEGEAKDWACVRKEAFQSDKNEYSHLSIADFSDSVPTIPPEEIRHMMVDRPGVDVEPDALGDQHRPGVDVEPDALGDQHHQQGHPGNLENGNAVLMFLQSLLPWVDIGANTNIDEQREVENPGEEN*

Protein Length: 141

Fln nts: GATAGATGCTGCATGGCAAGTTATTCAAATAGTGAACCAGGATGAAGGTGAAGCCAAAGATTGGGCTTGTGTGAGGAAGGAAGCCTTTCAGTCCGATAAGAATGAGTACTCCCACTTGTCAATTGCAGACTTTTCGGATTCTGTGCCAACCATCCCTCCAGAGGAAATCCGTCATATGATGGTGGATAGACCTGGAGTAGATGTTGAGCCAGATGCTCTTGGTGATCAACATCGACCTGGAGTAGATGTTGAGCCAGATGCTCTTGGTGATCAACATCACCAGCAAGGTCATCCTGGTAATTTGGAAAATGGTAATGCAGTGCTTATGTTTTTACAGTCTTTACTCCCTTGGGTGGACATTGGGGCTAATACCAATATTGACGAGCAAAGAGAAGTTGAGAATCCTGGCGAAGAAAATTGA___CGTAGTGTTAAGACTATCTCCACTATATTCCAGTCGATTTAGTATTCATTGGAAATAATTCTTTTACAGGCTATTTTCCATTATTAAGTTCCATATTAATACCACTGCAAT

Fln Alignment:

sp_v1.1_unigene64733___DAAWQVIQIVNQDEGEAKDWACVRKEAFQSDKNEYSHLSIADFSDSVPTIPPEEIRHMMVDRPGVDVEPDALGDQHRPGVDVEPDALGDQHHQQGHPGNLENGNAVLMFLQSLLPWVDIGANTNIDEQREVENPGEEN
B8LQE2_______________DAALQVIQIVNQDEGEAKDWACVRKEAFESDKNEYTHLSIADFSDSVPTIPPEEIRHMMVDRPGIDVEP---------------DALGGQHHQQGPPGNLENGNPVLMFLQSLLPWVDYGPNANIDEQREVENPGEEN

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
297		66	33		1.0
302	33			66	1.0
304	33		66		1.0
305	66		33		1.0
306		33		66	1.0
307		33	66		1.0
308	33			66	1.0
309	33			66	1.0
311	66		33		1.0
316		66	33		1.0
318	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
297		66	33		1.0
302	33			66	1.0
304	33		66		1.0
305	66		33		1.0
306		33		66	1.0
307		33	66		1.0
308	33			66	1.0
309	33			66	1.0
311	66		33		1.0
316		66	33		1.0
318	66	33			1.0

Position	A %	C %	G %	T %	Probability
297		66	33		1.0
302	33			66	1.0
304	33		66		1.0
305	66		33		1.0
306		33		66	1.0
307		33	66		1.0
308	33			66	1.0
309	33			66	1.0
311	66		33		1.0
316		66	33		1.0
318	66	33			1.0

Position	A %	C %	G %	T %	Probability
297		66	33		1.0
302	33			66	1.0
304	33		66		1.0
305	66		33		1.0
306		33		66	1.0
307		33	66		1.0
308	33			66	1.0
309	33			66	1.0
311	66		33		1.0
316		66	33		1.0
318	66	33			1.0