SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64722

Length: 388 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene64722
TTGATGGACGTCGTGACCTTGGCTGTCACTCAGCTCTTAAATGGTGGTTGGAACGAACAGGAAATCAATGGCATGATTCAGGCCCCATCCTCTCCATTGGGCACTGAAGATATATGTTTGGACAATAAGACAAATTTAGATGGCCTGCTATTGAAAGCAGATTCGGTGTCAAATTCTCTGGGCAGAGCCGGGTGGAGTTCGCAGGATATTGCAGAGATTTGGGACTTCGATTTCCCCACTAAAAGGCCCACCAAGAAATTCTCGCCAGAACTGGCGGGAAGGATCGGGAAACTCGCAGAAAATGTGGATCGAGGATGATTAAGGAATTGTCATATTTATGATTTCAATGAGTTCTGTTTTATCAGAAAATAAACCAGAATTTTTTACT

Ace file of the UniGene sp_v1.1_unigene64722

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	uncharacterized protein	-	-	4.51516e-30	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P9

Fln msg: atg_distance in limit (1-15): atg_distance = 5,

Fln protein: MDVVTLAVTQLLNGGWNEQEINGMIQAPSSPLGTEDICLDNKTNLDGLLLKADSVSNSLGRAGWSSQDIAEIWDFDFPTKRPTKKFSPELAGRIGKLAENVDRG*

Protein Length: 106

Fln nts: TTG_-_ATGGACGTCGTGACCTTGGCTGTCACTCAGCTCTTAAATGGTGGTTGGAACGAACAGGAAATCAATGGCATGATTCAGGCCCCATCCTCTCCATTGGGCACTGAAGATATATGTTTGGACAATAAGACAAATTTAGATGGCCTGCTATTGAAAGCAGATTCGGTGTCAAATTCTCTGGGCAGAGCCGGGTGGAGTTCGCAGGATATTGCAGAGATTTGGGACTTCGATTTCCCCACTAAAAGGCCCACCAAGAAATTCTCGCCAGAACTGGCGGGAAGGATCGGGAAACTCGCAGAAAATGTGGATCGAGGATGA___TTAAGGAATTGTCATATTTATGATTTCAATGAGTTCTGTTTTATCAGAAAATAAACCAGAATTTTTTACT

Fln Alignment:

sp_v1.1_unigene64722___LMDVVTLAVTQLLNGGWNEQEINGMIQAPSSPLG-TEDICLDNKTNLDGLLLKADSVSNSLGRAGWSSQDIAEIWDFDFPTKRPTKKFSPELAGRIGKLAENV
D5A8P9_______________LMDYLEELATLLRNGGWKEQDINDMIQASSSPSSDTEDIYLDSQTILEGLLLKADLMSNSLRKAGWSSQDIAEIFDINYPTKKPTKKISPELAERIGKLAEYV

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
136	80		20		0.9955
137	80			20	0.9955
138	80	20			0.9955
139			25	75	0.996473
141			20	80	0.9955
143		20	80		0.9955
144	80	20			0.9955
146			75	25	0.996473
148		75	25		0.996473
152		75		25	0.996473
153		25		75	0.996473
155		25		75	0.996473
158	75	25			0.996473
170			83	16	0.994515
171		16		83	0.994515
174		83	16		0.994515
176	83	16			0.994515
177	83	16			0.994515
180		80	20		0.995493
181			20	80	0.995493
186	40	20	40		1.0
187	20		80		0.995493
190	80	20			0.995493
191	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain