SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64549

Length: 434 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene64549
CGTCGTGACCTTGGCTGTCACTCATTCTGCATCGTGTGTGGATGGGGTTTTGACTGTTACTGTGCCCAGGATTCCGCCTGCCATGAAGTCCAAAACAATTCAGATTTCCGTGAAGTGACGATAAAGGAAGGCGTTTTGCTCAACCCTTTTTGTTTCTTTGTTCTTCAATTGTAGCCAGGTGCTGTTCCATTTTTGTTCAATGGAATGGAAGGGGTTTTTTGTTTGGAGAAGTCTGGTTTTATCAGTCTGGTTTTCCACTGGTGTCAGATGTAATTTCTTGTTTGAAATTGGAACAAAGAATTTCTGGTTTTCCACTGGTGTCAGATGTAATTTCTTGTTTGAATTTGGAACAAAGAATTGATTGCAATGAGTACTGTGTTTTTGGGATGTGTAAATGAGTCTTACTTTCAAGATTGCTGCAGCATACTATTCCC

Ace file of the UniGene sp_v1.1_unigene64549 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSP20 domain containing protein	-	-	2.0e-05	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSY4

Fln msg: your sequence is shorter than subject: 39 - 157

Fln protein: VVTLAVTHSASCVDGVLTVTVPRIPPAMKSKTIQISVK*

Protein Length: 40

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTGCATCGTGTGTGGATGGGGTTTTGACTGTTACTGTGCCCAGGATTCCGCCTGCCATGAAGTCCAAAACAATTCAGATTTCCGTGAAGTGA___CGATAAAGGAAGGCGTTTTGCTCAACCCTTTTTGTTTCTTTGTTCTTCAATTGTAGCCAGGTGCTGTTCCATTTTTGTTCAATGGAATGGAAGGGGTTTTTTGTTTGGAGAAGTCTGGTTTTATCAGTCTGGTTTTCCACTGGTGTCAGATGTAATTTCTTGTTTGAAATTGGAACAAAGAATTTCTGGTTTTCCACTGGTGTCAGATGTAATTTCTTGTTTGAATTTGGAACAAAGAATTGATTGCAATGAGTACTGTGTTTTTGGGATGTGTAAATGAGTCTTACTTTCAAGATTGCTGCAGCATACTATTCCC

Fln Alignment:

sp_v1.1_unigene64549___SASCVDGVLTVTVPRIPPAMKSKTIQISV
A9NSY4_______________SASCVDGVLTVTVPRIPPAMKSKTIQISV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
146		83		16	0.994512
368		66		33	0.997452
369		66	33		0.997452
370	33			66	0.997452
372			66	33	0.997452
379		33		66	0.997452
380	66	33			0.997452
382	25	75			0.996477
383	75		25		0.996477
388	75	25			0.996481
389	75		25		0.996483
392		33	33	33	0.997753
394	33	66			0.997476
407	66		33		0.997457
415	66	33			0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain