SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64542

Length: 564 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene64542
CGTCGTGACCTTGGCTGTCACTCAGTTTTATCCAAACGTCGTGACCTTGGCTGTCACTCAATCCATTTTGAAAACTGCAAAAGGTGTTCAACAGTCACAGTAAGTCTTGGTGGAAGCCGAGCATTTGTAGGCGCGGGATTAATTGCAAATACAGAAGAAGATTGAATCGCGAATGCAATGAATGAAGCCCTGGATCTCTCGCCCATGGATACGCCCGAGTCGCCTGCTTCCGGATACAGTACATCGCCCTCCCATTCTCCCAAGCGGGACGGCTTGATATTTGAACCCTCAGAGGAAGGGAGCAAGACATCCTCCTGTCTCAGGTTCTTGGTATCAAATGCAGCAGCGGATCGGTTATTGGGAAGGGTGGTGCTACTGTTAGTGATTTTCAGTCACAATCAGGGGCCAGGATTCAGCTCTCACGCAATCATGAATATTTTCCTGGAACAACTGATAGGATAATATTAGTGACGGGATCCATCAATGAAATACTGACCGCGGTTAATCTCATTCTCCAGAAACTGCTGAGCGAGGCTGACGATTCGNAGTGAGTGACAGGCCATG

Ace file of the UniGene sp_v1.1_unigene64542

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KH domain-containing protein NOVA-like [Oryza sativa Japonica Group] dbj\|BAD23125.1\| KH domain-containing protein NOVA-like [Oryza sativa Japonica Group]	-	-	7.0e-23	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	kh domain-containing protein nova-like	-	-	1.49166e-26	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY9

Fln msg: Overlapping hits, possible frame ERROR between 348 and 321, Unexpected STOP codon at 3' end. Distance to subject end: 228 aas, your sequence is shorter than subject: 125 - 357

Fln protein: MNEALDLSPMDTPESPASGYSTSPSHSPKRDGLIFEPSEEGSKTSSCxxxxxxxxxxxSVIGKGGATVSDFQSQSGARIQLSRNHEYFPGTTDRIILVTGSINEILTAVNLILQKLLSEADDSK*

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTATCCAAACGTCGTGACCTTGGCTGTCACTCAATCCATTTTGAAAACTGCAAAAGGTGTTCAACAGTCACAGTAAGTCTTGGTGGAAGCCGAGCATTTGTAGGCGCGGGATTAATTGCAAATACAGAAGAAGATTGAATCGCGAATGCA_-_ATGAATGAAGCCCTGGATCTCTCGCCCATGGATACGCCCGAGTCGCCTGCTTCCGGATACAGTACATCGCCCTCCCATTCTCCCAAGCGGGACGGCTTGATATTTGAACCCTCAGAGGAAGGGAGCAAGACATCCTCCTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCGGTTATTGGGAAGGGTGGTGCTACTGTTAGTGATTTTCAGTCACAATCAGGGGCCAGGATTCAGCTCTCACGCAATCATGAATATTTTCCTGGAACAACTGATAGGATAATATTAGTGACGGGATCCATCAATGAAATACTGACCGCGGTTAATCTCATTCTCCAGAAACTGCTGAGCGAGGCTGACGATTCGaAGTGAGTGACAGGCCATG

Fln Alignment:

sp_v1.1_unigene64542___MNEALDLSPMDTPESPASGYSTSPSHSPKRDGLIFEPSEEGSKTSSCLxxxxxxxxxGSVIGKGGATVSDFQSQSGARIQLSRNHEYFPGTTDRIILVTGSINEILTAVNLILQKLLSEADDS
A9NUY9_______________MSEALDLSPMDTPESPASGYSTSPSRSPKRDGLIYEPSEDGSKTSSCLxxxxxxxxxGSVIGKGGATVSDFQTQSGARIQLSRNHEFFPGTTDRIILVTGSINEILTAANLILQKLLSEAEDN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
39			33	66	0.997471
40	33	66			0.997471
44	66			33	0.997471
45		66		33	0.997467
46		66	33		0.997467
47	33			66	0.997467
79	40		40	20	1.0
80	40		20	40	1.0
81	40	40		20	1.0
82	40	20	40		1.0
83	20		40	40	1.0
84		16	83		0.994523
85	33		16	50	1.0
86		50	50		1.0
87	16	33		50	1.0
89		60		40	1.0
90	60		40		1.0
91	60		40		1.0
93	60			40	1.0
98		33		16	1.0
101	60			40	1.0
102		40	60		1.0
103	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain