SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64481

Length: 362 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene64481
AGTTAAGCGCAGATTCATGACATTTTGTAGGCGCTGAATAGCATCTTGGACCTCTTCTCGCTGCAGTTTAGCTGTCAGTGAAAAACTTGAGACGTCATTGCGTGATCTTGCACGGACTGGAGACGTACAAGCTTGCAAGGCTGTTCGGAAGGCAGCTGATGCTACATTGAAAGATACTGCGAAGGAGCTGAAGTCTATACTTGATATCTTGCAGTCTTCCTCCCAAGCGTTGCATATTTTGCCCAAGGTAGAAGAGTTGATTCATAAAGAGAAAGAAAAGCAGGACAAGTTAATTCAGAAACATACTGTAGTAGTTGATAGCTACGATAAGAAGCTACCAAGTAAGGAGATTGACAGTCGCA

Ace file of the UniGene sp_v1.1_unigene64481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribophorin, putative (EC:2.4.1.119); K12666 oligosaccharyltransferase complex subunit alpha (ribophorin I)	-	-	3.0e-22	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	ribophorin i family protein	-	-	6.99317e-23	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	6.99317e-23	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.99317e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BH89

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 25 aas, your sequence is shorter than subject: 120 - 174

Fln protein: VKRRFMTFCRR*IASWTSSRCSLAVSEKLETSLRDLARTGDVQACKAVRKAADATLKDTAKELKSILDILQSSSQALHILPKVEELIHKEKEKQDKLIQKHTVVVDSYDKKLPSKEIDSR

Protein Length: 121

Fln nts: AGTTAAGCGCAGATTCATGACATTTTGTAGGCGCTGAATAGCATCTTGGACCTCTTCTCGCTGCAGTTTAGCTGTCAGTGAAAAACTTGAGACGTCATTGCGTGATCTTGCACGGACTGGAGACGTACAAGCTTGCAAGGCTGTTCGGAAGGCAGCTGATGCTACATTGAAAGATACTGCGAAGGAGCTGAAGTCTATACTTGATATCTTGCAGTCTTCCTCCCAAGCGTTGCATATTTTGCCCAAGGTAGAAGAGTTGATTCATAAAGAGAAAGAAAAGCAGGACAAGTTAATTCAGAAACATACTGTAGTAGTTGATAGCTACGATAAGAAGCTACCAAGTAAGGAGATTGACAGTCGCA

Fln Alignment:

sp_v1.1_unigene64481___SRCSLAVSEKLETSLRDLARTGDVQACKAVRXXXXXXXXXXXXELKSILDILQSSSQALHILPKVEELIHKEKEKQDKLIQKHTVVVDSYDKKLPSKEIDSR
A5BH89_______________SRC-LSIHDKLEASLRDLSRTGDVQACKAARKASDGQLKELSKELRPLLAFLQSSPQAAQILPKVEELVAKERELQEKLMLKHTTVADSYEKKSGGKEIENR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain