SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64291

Length: 291 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene64291
CGTCGTGACCTTGGCTGTCACTCAATCTATTTGAGAAAGGGTATCGGAGTTGGAGCTTTTTGTAAAATCTATGGTGGTCGTAAACGTCGTGACCTTGGCTGTCACTCATTTCTGTAAAAGCAGTGGATCTATTGCTCGACATGTACTACAGCAATTAGAGAAGATGAATATTGTTGAGATGGATCCCAATGGTGGACGGCGTATCACATCTAGTGGTCAGAGAGATCTTGATCAGGTTGCTGGTCGTATTGCGGTTGCCGCACCTTGAGCAATTGAGAGATTAATTTGCAG

Ace file of the UniGene sp_v1.1_unigene64291

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S19 (RPS19A); K02966 small subunit ribosomal protein S19e	-	-	3.0e-22	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	40s ribosomal protein s19	-	-	1.05863e-28	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	1.05863e-28	92%
Blast2go	cell wall	GO:0005618	Cellular Component	1.05863e-28	92%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	1.05863e-28	92%
Blast2go	membrane	GO:0016020	Cellular Component	1.05863e-28	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S19e	IPR001266	-	1.05863e-28	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKW9

Fln msg: Separated hits, possible frame ERROR between 87 and 107, your sequence is shorter than subject: 90 - 144

Fln protein: RRDLGCHSIYLRKGIGVGAFCKIYGGRKxxxxxxxxHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLDQVAGRIAVAAP*

Protein Length: 91

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTATTTGAGAAAGGGTATCGGAGTTGGAGCTTTTTGTAAAATCTATGGTGGTCGTAAACGxxxxxxxxxxxxxxxxxxxxxTCATTTCTGTAAAAGCAGTGGATCTATTGCTCGACATGTACTACAGCAATTAGAGAAGATGAATATTGTTGAGATGGATCCCAATGGTGGACGGCGTATCACATCTAGTGGTCAGAGAGATCTTGATCAGGTTGCTGGTCGTATTGCGGTTGCCGCACCTTGAGCAATTGAGAGATTAATTTGCAG

Fln Alignment:

sp_v1.1_unigene64291___IYLRKGIGVGAFCKIYGGRKRxxxxxxxHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLDQVAGRIAVAAP
A9NKW9_______________IYLRKGIGVGAFSKIYGGRQRxxxxxxxHFCKSSGSIARHVLQQLEKMNIVEMDPNGGRRITSSGQRDLDQVAGRIAVAAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain