SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64290

Length: 558 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene64290
CGTCGTGACCTTGGCTGTCACTCAGGTCTCACATACTTCAACGTGGTGCTCGTCTGTCATTGCGTCGTGACCTTGGCTGTCACTGCGGTTTCTATAAAGGGGTCAAATACTAGTTGGCAGCCGATGTCACGCAACTGGGGACAGAACTGGCAAAGCAATTCCTTCTTGAACGGGCAGAGCCTGTCCTTCAAGGTCACCACCAGTGATGGGCGGACAATTGTTTCATATAACACTGCTCCTTCTAACTGGCAATTCGGCCAGACATTCGAGGGAAGCCAACTTTAAGAAATGCCAGAGGCGAATGAATGTGTATAGCCATCGATCAATAATTTGGGATGATGCGGTGTACTCCAGTCACCGGTGTCCCCGTTATTATCATTGTTGAATTGTAGTATGTATCTGGATTGACCGAGATCAATGTTAGAGGAGTCTCTATAGCCATGTTCCTAGGAAGAATTGTCATTGTCATGTCCATTCCGTGTAATAATTTTCTTCCAAAATATATGTGCATAGCTTTCAAAACGGCGCCGAGTATATGGGGTTTCGATGAGAGCTTCC

Ace file of the UniGene sp_v1.1_unigene64290

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin 1 n=1 Tax=Cunninghamia lanceolata RepID=A1E2V1_CUNLA	-	-	2.0e-31	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	expansin	-	-	6.67042e-32	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN89

Fln msg: your sequence is shorter than subject: 95 - 253

Fln protein: RRDLGCHSGLTYFNVVLVCHCVVTLAVTAVSIKGSNTSWQPMSRNWGQNWQSNSFLNGQSLSFKVTTSDGRTIVSYNTAPSNWQFGQTFEGSQL*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCTCACATACTTCAACGTGGTGCTCGTCTGTCATTGCGTCGTGACCTTGGCTGTCACTGCGGTTTCTATAAAGGGGTCAAATACTAGTTGGCAGCCGATGTCACGCAACTGGGGACAGAACTGGCAAAGCAATTCCTTCTTGAACGGGCAGAGCCTGTCCTTCAAGGTCACCACCAGTGATGGGCGGACAATTGTTTCATATAACACTGCTCCTTCTAACTGGCAATTCGGCCAGACATTCGAGGGAAGCCAACTTTAA___GAAATGCCAGAGGCGAATGAATGTGTATAGCCATCGATCAATAATTTGGGATGATGCGGTGTACTCCAGTCACCGGTGTCCCCGTTATTATCATTGTTGAATTGTAGTATGTATCTGGATTGACCGAGATCAATGTTAGAGGAGTCTCTATAGCCATGTTCCTAGGAAGAATTGTCATTGTCATGTCCATTCCGTGTAATAATTTTCTTCCAAAATATATGTGCATAGCTTTCAAAACGGCGCCGAGTATATGGGGTTTCGATGAGAGCTTCC

Fln Alignment:

sp_v1.1_unigene64290___SGLTYFNVVLVCHCVVTLAVTAVSIKGSNTSWQPMSRNWGQNWQSNSFLNGQSLSFKVTTSDGRTIVSYNTAPSNWQFGQTFEGSQL
B8LN89_______________NGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVVSYNAAPSNWQFGQTFEGGQL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
150	88			11	0.999952
163	5	82		11	0.999919
207		89		10	0.999919
217		4	85	9	0.999726
221			90	9	0.999872
224	90			9	0.999872
227	90	9			0.999872
245	9		90		0.999872
278		10	90		0.999898
297	90		10		0.999898
352		90		10	0.999898
361		89	10		0.999919
362		89	10		0.999919
364	10		89		0.999919
407			10	89	0.999919
425			11	88	0.999952
533	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain