SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64275

Length: 815 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64275 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 n=77 Tax=Embryophyta RepID=VATL1_ARATH	-	-	2.00386e-43	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	vacuolar atp synthase proteolipid subunit	-	-	5.60519e-45	97%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	5.60519e-45	97%
Blast2go	ATPase, F0/V0 complex, subunit C	IPR002379	-	5.60519e-45	97%
Blast2go	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	5.60519e-45	97%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
39		16		83	0.994515
68		85		14	0.993533
69	85			14	0.993533
70			85	14	0.993533
71		85		14	0.993533
72	85			14	0.993533
73			85	14	0.993533
75	85		14		0.993533
531	80			20	0.995493
535	80		20		0.995493
542	75	25			0.996473
544	25			75	0.996474
545	25			75	0.996473
546			25	75	0.996473
548		80		20	0.995493
550	20			80	0.995493
551		20		80	0.995493
553	20		80		0.995495
554		25	75		0.996477

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain