SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64266

Length: 1077 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64266 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Band_7 domain containing protein	-	-	2.0e-24	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	band 7 family protein	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Band 7 protein	IPR001107	-	0.0	88%
Blast2go	Stomatin	IPR001972	-	0.0	88%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
616	33	66			0.997456
618	33		66		0.997455
619	33			66	0.997455
838		25		75	0.996474
949	75	25			0.996478
950	75	25			0.996478
953			75	25	0.996479
1004	33		66		0.997476
1062		33	66		0.997453
1063	66	33			0.997457
1064	66	33			0.997457
1065	66	33			0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain