SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64249

Length: 1921 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64249 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, hydrolyzing O-glycosyl compounds, putative	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	hydrolyzing o-glycosyl	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 5	IPR001547	-	77%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	77%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg: your sequence is shorter than subject: 412 - 429

Fln protein: MGGGMLMRFGAFACLFFLSFLQQAAARRNGFVKTKGTHFSVNGNPLFVNGFNSYWLMTMAADPTQRNKVTSAFEQAAASRLNVARTWAFNDGQYEALQTSPGVYDEHVFQALDFVISEAKKYGLRLILSLANNYADFGGKAQYVQWARNAGQSLNSEDDFFTNPTVKGYYKNHIKTVLTRVNSITGVAYKDDPTIFSWELMNEPRCPSDPSGRTIQGWIEEMASHVKSIDRNHLLEAGLEGFYGESKKENNPGFYVGTNFITNNQIKGIDFATIHCYPDNWLSGSDEEAQLSFVESWIESHLKYGKRILKKPVLLAEFGKSSKDPGFDISQRNELFGMIYKHVYASARRGGASGGAMFWQLMAEGMDSSGDGYEIVLSQNPSTTSIISAQSHKLAELTHLLTKLYETGGRD*

Protein Length: 413

Fln nts: ATGGGGATAGCATTTCAGTTTTTGGAGCTCTCCAATACAGAGAGCCTCCTTCGAGTAGTTTTAACTCATAAACTTGGGAATCTGCATTGTTTTCTGAGGTCTGTGGAGTTATTTTTGTCAA_-_ATGGGTGGTGGTATGCTGATGCGTTTTGGGGCTTTTGCCTGTCTGTTCTTTCTAAGTTTTCTTCAGCAAGCTGCAGCCAGAAGAAATGGGTTTGTGAAGACAAAGGGCACCCATTTTTCTGTCAATGGGAATCCACTGTTTGTCAATGGGTTCAACTCTTACTGGCTAATGACTATGGCAGCAGATCCAACACAGAGAAATAAGGTTACCTCTGCTTTTGAACAAGCTGCAGCTTCTCGGCTCAATGTTGCCAGAACTTGGGCATTCAACGATGGCCAGTACGAGGCATTGCAGACTTCTCCCGGTGTATATGATGAACATGTCTTTCAGGCCCTGGACTTCGTGATCTCTGAGGCCAAGAAGTATGGTCTCAGACTAATACTTAGCCTGGCCAACAATTATGCGGACTTCGGAGGAAAGGCCCAATATGTACAATGGGCTCGCAATGCTGGACAGAGTCTCAACTCTGAAGATGATTTTTTCACCAATCCCACTGTTAAAGGATACTATAAGAACCATATTAAGACTGTATTGACCAGAGTGAACAGCATTACTGGAGTAGCCTACAAAGATGACCCTACAATCTTTTCTTGGGAGCTCATGAACGAGCCTCGTTGTCCAAGTGATCCTTCTGGGAGGACCATCCAGGGATGGATAGAGGAGATGGCTAGCCATGTCAAATCCATTGATAGAAACCATCTTCTGGAGGCTGGGTTGGAAGGGTTTTATGGGGAATCCAAAAAAGAAAACAACCCAGGCTTCTATGTGGGAACAAATTTCATTACCAATAACCAAATCAAAGGAATTGATTTCGCAACTATTCATTGCTATCCTGATAATTGGCTTTCTGGATCAGATGAAGAGGCCCAACTTTCGTTTGTGGAGAGTTGGATAGAGAGTCATTTGAAATATGGGAAAAGAATACTGAAGAAACCAGTTCTGTTAGCGGAGTTTGGGAAATCCTCTAAAGACCCGGGATTCGACATTAGCCAGAGAAACGAGTTATTTGGTATGATTTATAAACACGTGTATGCTTCTGCTAGGAGGGGAGGAGCGAGTGGAGGAGCCATGTTTTGGCAACTGATGGCAGAAGGAATGGATTCATCTGGAGATGGGTATGAGATTGTTTTGTCTCAGAATCCATCCACAACCTCTATTATTTCTGCTCAGTCTCATAAATTGGCTGAGCTTACTCATTTGTTAACAAAGTTGTATGAGACTGGAGGCCGAGATTGA___TTGTCCAATTTGTGTACATATTTGGTGAGAGTATCTCTGCATAAGTAGTAGTTATTATTGAAATCTATAGTGATCAGGTATTAGTAAAATCTCGATTGAGCAGCTTGATGTTGATGATAGTCAAAGCTCTGAACCAGAGCGAGAAGATGGGGAGCTGCGTAAACATCGAGTTCCAGTTCCATAGGTGCCCTTGGCTAAAAGTGAAGAAAACAAGCAGGGGCAAATCGGTATATACATGAATTTTACTACGAGGAGATGGCAATAGCCATCCAAGAGCATATGTTTGTTTACTCTAAGGAGATGGAAATAGTCATACAAGAGTATATGCTTGTTACTCTATAAAACATTGTTACTCTATAAACCAATGTTGCATATTTGATTAGACACATCCTATATGCATAATATTTGAAGAAAGTTATCTAGGCTTATTAGGGTTAGTACTCTCTCACTTTTGTAATGGGTGAGGTTGTAAGTTTACATCCTCTTTGATTTTATGTAAGGGAGAGTATCTTCTATATGATTGTATTATTAATATTTCAATGCCATAGCCAGGGTCATTGAGTC

Fln Alignment:

sp_v1.1_unigene64249___GAFACLFFLSF------LQQAAARRNGFVKTKGTHFSVNGNPLFVNGFNSYWLMTMAADPTQRNKVTSAFEQAAASRLNVARTWAFNDGQYEALQTSPGVYDEHVFQALDFVISEAKKYGLRLILSLANNYADFGGKAQYVQWARNAGQSL-NSEDDFFTNPTVKGYYKNHIKTVLTRVNSITGVAYKDDPTIFSWELMNEPRCPSDPSGRTIQGWIEEMASHVKSIDRNHLLEAGLEGFYGE---SKKENNPGFY---VGTNFITNNQIKGIDFATIHCYPDNWLSGSDEEAQLSFVESWIESHLKYGKRILKKPVLLAEFGKSSKDPGFDISQRNELFGMIYKHVYXXXXXXXXXXXAMFWQLMAEGMDSSGDGYEIVLSQNPSTTSIISAQSHKLAEL
D5A9Z9_______________GVVSCIVFLYLNFGDVHILPFSQPRMSFVERNGSHFVVDDKELYVNGWNSYWLMDQSVGDSTRHRVKTMLRRGAEMGLTVVRTWAFNDGGYNALQQFPGTFDERVLRALDFVIVEARRNGLRLIFSLVNNLNAYGGKVQYVEWAHAAGINVGSSNDSFFSDPTIRGYYKEYVKSILVRKNSISGVEYRNEPAIFAWELVNEPRCTSDASGQTLQTWISEMAKFIKSLDSRHLLTVGLEGFYGKTTPNKIELNPGDWAVSLGSDFIWNSQVEEIDFASVHAYPDSWIPNVDLEDHLNYFSKWVTSHIDDGEQILKKPVLFTEFGLSSHHKGFEQSHRDRLFKTMYEEIDESARKGGAGGGALIWQFVVEGMEEYGDEFAFVPWQFPSTHKLIVEQSCRLQTL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1538		88		11	0.923564
1641	12			87	0.992554
1707		83		16	0.994512
1752	88	11			0.923564
1753		11	88		0.923564
1754	77	11			0.968132
1756	88			11	0.923564
1786		85		14	0.993533
1835	66		33		0.997452
1838		25		75	0.996473
1841			75	25	0.996479
1915	66		33		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain