SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64246

Length: 1333 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene64246

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=1 Tax=Picea abies RepID=Q2VWL9_PICAB	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	leucine rich repeat-like protein	-	-	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKS2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 189 - 244

Fln protein: AVVQVKI*HAWKL*ARLDVVEQ*HTSKHARF*LGPLL*FGGVAPWYCDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLGNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVKNSAMMELIVEVAEAHFSLDWLDG*

Protein Length: 190

Fln nts: CAGCAGTGGTCCAAGTTAAAATCTAGCATGCTTGGAAGCTTTAAGCTCGACTGGATGTTGTTGAACAGTGACATACTTCCAAGCATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGAGGAGTTGCCCCCTGGTATTGTGACATGTCTTCAGTTGAAAATTGGACTATCACTAATTGTCACCTTCTTCGAAATTTACCTGATAACTTGGGGAAGCTCAGCTCTTTAAGAATGTTGAGGCTATCTGCATGTGTAGGCCTAAAGGAGCTTCCAGAGTCCATTGGGAAACTTGCAAAGCTGGAATATCTGGACATTTCGCTATGTGAGTGCTTAAAAGAGCTTCCCGAGGAAATGGGAAAACTAGGGAATCTTGAGGAGCTTGACATGAGAGAGTGTTCCCGGTTGAGGAAATTGCCTAGATCAGTTGGAGGGATGAAATCTCTAAAGCGTGTTATTTGTGATGAGAAGATTGCACAGCAATGGAATCGTGTCAAGAACTCTGCTATGATGGAGCTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTCGATGGTTGA___CATCCTACGTGCTTCCATCCATTTTGTGGAGAGATTATATGTGCTCTCCTGCTCGAACTTCAATCTATTGAAGGGTAAGGAGGGTACTGCAATCAAAAGAGAAGAGGGATGGAAGCAGCAAAGAGGGAGCGGCAAAACAGTTGTCTTTGCTGCTACCCTGCCCAATTGTCCAAATCTACCGTTGGGTTAAGGAGATATGTTTGTATGGTATGTTGTGAACTAAGTGTGCCGATGGTGAAGATGGAGGAGCAATAGAGCTTGTGATTATGCATGTGTAGGACAATCACCTGTTCAAAGTTCTAACCTGCCCCGTGCAAAGTTCCACCTATTTCTGTTTGAGTTGGGGAGTGTTCCTGCCATTTATGAAGGGGAGAGATTTCTGATATCCAGGATTTGTTGAAGTGTGACAGAGTAGACGAAGAGTGTGAGGGATTTCTGATGTACAGGACTTGTTTGTGTGACAGAAATATACAAGCTTTGGAAAGATACAGGTTTGGAATGGATTGGATAAGGAGTATTCGAAGTGTAAAATCATATTTTAAATCCTTTCTTATTTTCAGTCAGCTGTCTCACGAGATGGACCTTGTACAGCCTCCTATCTTAAGAGTGGACGACTTGTCTTTTGATCTTTGATAATTTTAGTGGCGTCAAGGAGCTAGCATAAAACTTGAATATATGTATATATATCTATATGAATGAATGAATGAGAGATTGAATAATAAGTTCGGGAATGGTGTCATTATTGTTAAAAGTTTTATAGAAGG

Fln Alignment:

sp_v1.1_unigene64246___CDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLGNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVK-NSAMMELIVEVAEAHFSLDWLDG
A9NKS2_______________CDMSSVQKWSITNCHLLQKLPDDLGRLSSLRMLRVSACLGLKELPTSIGKLGKLEYLDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLRSLKHVICDEKIGQQWSRVKSSSAIMDLRIEVVEAHFSLDWLDG

SNPs (tot: 4)

Position	A %	G %	T %	Probability
846	11	88		0.991528
849		11	88	0.991528
850	88	11		0.991528
875	77	22		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain