SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64235

Length: 1190 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene64235

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIR8_VITVI	-	-	69%
FL-Next	sp=S-adenosylmethionine synthase 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	s-adenosylmethionine synthetase	-	-	96%

Source	InterPros	Term	Type	Identity
Blast2go	S-adenosylmethionine synthetase	IPR002133	-	96%
Blast2go	S-adenosylmethionine synthetase, N-terminal	IPR022628	-	96%
Blast2go	S-adenosylmethionine synthetase, central domain	IPR022629	-	96%
Blast2go	S-adenosylmethionine synthetase, C-terminal	IPR022630	-	96%
Blast2go	S-adenosylmethionine synthetase, conserved site	IPR022631	-	96%
Blast2go	S-adenosylmethionine synthetase superfamily	IPR022636	-	96%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2P4

Fln msg: your sequence is shorter than subject: 276 - 394

Fln protein: QDPDSKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRWDGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGLARRCIVQVSYAIGVPEPLSVFVDSYGTGTIPDKEILELIKKNFDFRPGMMTINLDLKRGVNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEKALQA*

Protein Length: 277

Fln nts: CCCAGGACCCTGATAGCAAGGTAGCATGCGAGACTTGCACTAAAACGAACATGGTCATGGTTTTTGGTGAAATCACCACCAAGGCCAATGTCGACTATGAGCAGATCGTTCGCAAGACCTGCAGGGAGATTGGATTCATTTCTGACGATGTGGGTCTCGATGCTGATCACTGCAAAGTCCTGGTTAACATCGAACAGCAGAGCCCTGACATTGCCCAGGGCGTTCATGGGCACTTTACCAAGAGGCCTGAGGAGATTGGAGCCGGTGACCAGGGACACATGTTTGGTTATGCAACTGATGAGACCCCTGAGTTGATGCCTCTCACCCATGTGCTGGCTACCAAACTGGGAGCAAAGCTCACAGAGGTAAGATGGGATGGAGATGCAGGGCTAACGGGGAGAAAGATAATCATAGACACCTATGGAGGGTGGGGAGCTCATGGAGGAGGGGCATTCTCTGGCAAAGATCCCACCAAGGTGGACCGAAGTGGAGCATACATAGTTAGACAGGCTGCCAAGAGCATTGTTGCAGCTGGCCTTGCAAGAAGATGCATTGTGCAGGTCTCCTATGCCATTGGAGTGCCTGAGCCTCTGTCTGTCTTTGTTGACTCGTATGGCACAGGGACCATTCCAGACAAGGAAATTCTGGAGCTCATAAAAAAGAACTTTGATTTCAGGCCTGGCATGATGACTATCAATCTTGATCTGAAGAGAGGAGTAAATGGCAGGTTCCAAAAGACTGCAGCCTATGGCCACTTCGGCAGGGACGACCCTGATTTCACCTGGGAGATTGTCAAGCCTCTGAAGCAGGAGAAGGCTCTCCAAGCCTAG___TGAATGCCCAGCACTCATTCATTCTTGTCATCAATAAGCTCAATTTGAGCCGAATGTTGTTGGATGCACTCATTCATTCCTGTCATCAATAAGCTTAATTATCTCTCTGAAAAGGTTGGGATATAATGCTGAGAATGGTTGTAAGAACCAGATAAGTGGGAAAGGGTAACAACGCCCACTTTTTTATTTAAAGTTGATTCAAGTTTTCACAAATTTGCGCTTGAAACCAATGTGCATGCTGACATCACAGATCTTACTTATGGGTGCCAAGTTTTTGGTCAAATCTGAGATGTGCAAAATCCTAAGGAGGGTGCAGCATTTTCATCCTTCCATGTTTTATGATTTTGGTTGTCTAAGTAA

Fln Alignment:

sp_v1.1_unigene64235___QDPDSKVACETCTKTNMVMVFGEITTKANVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRWDG
A9P2P4_______________QDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGYQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
570	25		75		0.996473
1093	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain