SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64223

Length: 2010 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene64223
ATGGGGGCCGTCGTGACCTTGGCTGTATCGGGGGCCGTCGAATTTGTCAATAGAAGTTGCGTGCCATCTATTTGACAAATTTCTCTCAGAAAAATCGCTGGAACATCTCAAATTCTTCCCTCTAACCAGGCCAGGCGTTTGCCCTCTCCATCTCAAAAATTCGATTACACGCGAATATTTTGGGCCCTGGTTTTGTCTGAACAATGACGATTGTGGCCTCGCCTGAGAGGAGATCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAACCACCAGGATGGCGAAGATGGTGTGCATGAAGGATTCAATGGCGCCTCCTTCTCTGGCGCGGTGTTCAATCTGTCGACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAGGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGGGCAGCGGCTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGGAAGATGATGTTGCAGATCTGCGTGATTATTAACAATTTGGGCATTCTTATTGTTTATATGATAATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGCTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTTGCTGTTGTATTTGTTGTGATTACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCGAAGCACCAAGATTGTTACCAGATATTGTGGATTTTACTTCGTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTGCTTACATCTGTCATTACAATGTTCATTCCATATACAATGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAAGTACAAGCTTTTTTGGCTTTCTTCTATTTGGAGACCAGACCATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCCTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATTTTTTTTGCCCTGAGACTTAATCTTGATGGGCTTGTCTTTCCAGCAAAAAAGCACCTTGTTTTGGACAATAAGAGGTTCATTTTGATCACTGCTGGGTTAATTGGAGTCGTTTTCCTTGGGGCATCATTCATACCAAGTATCTGGGATGCATTTCAATTCACAGGGGCCACAGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAGGAAGGACATATATATCGCATTGTTCATGATTTTTCTGGCAGTAGTTTCAAGTTCAATTGCTATAGTGAGTGACATTAATTCTCTGTTCAACAAAAAGGAGGAAGGCCCTCCACGATCTTGAGAATGATTTTTAATGAGGAGCAGGTGGTGCACCTACATATAAAGATTATTTGGAACAGAACCGAAAAAGGAACGCTGCTTTGGGAATTTGTTTGTAGAATTGTGAAGAGTGGATAAACTTTTGTAAAGCCTTGTATGTTCTGCCATGGTCACTCGGCCTTCTAGTTAATGATGCTACTGTGTTTGTAGTTGTATCATTGGAAAAGGAATATAGTTGATCTCGCGTCGACATATAAGATGATACACTGTGGTTTGCCAAAGAAGTTGTGTTCTACAAACCATATTGTGATAATCAGTATTAGTAGTGTTCACAAATTTCCAAAAAAATGTGTCGCTTTCATTTTTTTGGATGCAAATGATTTGTTCTCTCAATTTGAGAAATAAGACTAAGTTTGTCACTCATCATAACAATTGTG

Ace file of the UniGene sp_v1.1_unigene64223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9T738_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	amino acid	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg:

Fln protein: MTIVASPERRSRKQKPLVSETSPLLPENHQDGEDGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLILGSLLIIFVCFLTDASIDILLRFSRAGAAASYGGVMGDAFGKIGKMMLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHAGILEEWFGFHWWNGRVPILVLTIVLILAPLASFKRVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTVEAPRLLPDIVDFTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYISTSFFGFLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLVFPAKKHLVLDNKRFILITAGLIGVVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTRKDIYIALFMIFLAVVSSSIAIVSDINSLFNKKEEGPPRS*

Protein Length: 465

Fln nts: ATGGGGGCCGTCGTGACCTTGGCTGTATCGGGGGCCGTCGAATTTGTCAATAGAAGTTGCGTGCCATCTATTTGACAAATTTCTCTCAGAAAAATCGCTGGAACATCTCAAATTCTTCCCTCTAACCAGGCCAGGCGTTTGCCCTCTCCATCTCAAAAATTCGATTACACGCGAATATTTTGGGCCCTGGTTTTGTCTGAACA_-_ATGACGATTGTGGCCTCGCCTGAGAGGAGATCCCGGAAGCAGAAGCCTTTGGTGAGTGAAACCAGTCCCCTGCTGCCCGAGAACCACCAGGATGGCGAAGATGGTGTGCATGAAGGATTCAATGGCGCCTCCTTCTCTGGCGCGGTGTTCAATCTGTCGACTACGGTGGTGGGAGCGGGGATTATGGCTCTGCCTGCTACTATGAAGGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGAGCCGGGGCAGCGGCTTCCTATGGCGGCGTCATGGGAGACGCCTTTGGGAAAATTGGGAAGATGATGTTGCAGATCTGCGTGATTATTAACAATTTGGGCATTCTTATTGTTTATATGATAATCATAGGCGATGTGCTATCTGGAACATCATCAAATGGCGTGCATCATGCTGGTATACTTGAAGAATGGTTTGGATTTCATTGGTGGAATGGACGTGTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGCGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTTGCTGTTGTATTTGTTGTGATTACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCGAAGCACCAAGATTGTTACCAGATATTGTGGATTTTACTTCGTTCTTGAAGCTTTTCACTGTGGTACCAGTTATTGTGACTGCTTACATCTGTCATTACAATGTTCATTCCATATACAATGAACTTGAGGACCCTTCAGAAATGCAGCCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAAGTACAAGCTTTTTTGGCTTTCTTCTATTTGGAGACCAGACCATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCCTACAGTGCTGTGCTGAATGACATTGTTCGTGTGACCTATGTTGTACATCTGATGCTGGTCTTTCCTCTCATTTTTTTTGCCCTGAGACTTAATCTTGATGGGCTTGTCTTTCCAGCAAAAAAGCACCTTGTTTTGGACAATAAGAGGTTCATTTTGATCACTGCTGGGTTAATTGGAGTCGTTTTCCTTGGGGCATCATTCATACCAAGTATCTGGGATGCATTTCAATTCACAGGGGCCACAGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGACACTCATGGAATCTCAACCAGGAAGGACATATATATCGCATTGTTCATGATTTTTCTGGCAGTAGTTTCAAGTTCAATTGCTATAGTGAGTGACATTAATTCTCTGTTCAACAAAAAGGAGGAAGGCCCTCCACGATCTTGA___GAATGATTTTTAATGAGGAGCAGGTGGTGCACCTACATATAAAGATTATTTGGAACAGAACCGAAAAAGGAACGCTGCTTTGGGAATTTGTTTGTAGAATTGTGAAGAGTGGATAAACTTTTGTAAAGCCTTGTATGTTCTGCCATGGTCACTCGGCCTTCTAGTTAATGATGCTACTGTGTTTGTAGTTGTATCATTGGAAAAGGAATATAGTTGATCTCGCGTCGACATATAAGATGATACACTGTGGTTTGCCAAAGAAGTTGTGTTCTACAAACCATATTGTGATAATCAGTATTAGTAGTGTTCACAAATTTCCAAAAAAATGTGTCGCTTTCATTTTTTTGGATGCAAATGATTTGTTCTCTCAATTTGAGAAATAAGACTAAGTTTGTCACTCATCATAACAATTGTG

Fln Alignment:

sp_v1.1_unigene64223___MTIVASPERRSRKQKPLVSETSPLLPENHQDGEDGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVXXXXXXXXXXXFVCFLTDASIDILLRFSRAGAAASYGGVMGDAFGKIGKMMLQICVIINNLGILIVYMIIIGDVLSGTSSNGVHHAGILEEWFGFHWWNGRXXXXXXXXXXXXXXXXSFKRVDSLKXXXXXXXXXXXXXXXXXXGIAIVKLFSGTVEAPRLLPDIVDFTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYISTSFFGFLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLVFPAKKHLVLDNKRFILITAGLIGVVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTRKDIYIALFMIFLXXXXXXXXXXXDINSLFNK
D5ACG6_______________MTIVASPERRSRKQKPLVSESSPLLPEKHQDGEDCVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGILLIIFVGLLTDASIDILLRFSRAGAAASYGGVMGDAFGRIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGLHHAGILEEWFGFHWWNGRVQILLLTTVLILAPLVSFKKVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTIQMPRLLPDIVDHTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYITTSFFGFLLFGDQTMDDILANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILITAGLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTNGISTKKDIYLSLFMIFLAVVSSSIAIFSDINSMFKK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
1060	80			20	0.999996
1118	88	11			0.991528
1120	88			11	0.991528
1122		88	11		0.991528
1124	88			11	0.991528
1129	88			11	0.991528
1133	88	11			0.991528
1164		11	88		0.991528
1166		11	88		0.991528
1170			11	88	0.991528
1171	11	88			0.991528
1172		88	11		0.991528
1173		88		11	0.991528
1174			11	88	0.991528
1182		11		88	0.991528
1183	11		88		0.991528
1186		88	11		0.991528
1187			11	88	0.991528
1317	90	10			0.90298
1319	90			10	0.90298
1320		10	90		0.90298
1324			10	90	0.90298
1326	90	10			0.90298
1331			10	90	0.90298
1343	10		90		0.90298
1371		10	90		0.90298
1372		90	10		0.90298
1428		6	93		0.999364
1429		90	3	6	0.997952
1430	86		3	10	1.0
1432			6	93	0.999364
1433		10		90	1.0
1438		6		93	0.999364
1643		11	88		0.999937
1656	88		11		0.999952
1860		16		83	0.999991
1877	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain