SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64217

Length: 1411 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene64217

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=118 Tax=Eukaryota RepID=TBA2_ARATH	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alpha tubulin 1	-	-	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: your sequence is shorter than subject: 386 - 450

Fln protein: VVTLAVTQFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDVAQVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDEDEGEEY*

Protein Length: 387

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCAGTGAGACAGGTGCCGGTAAGCATGTTCCTCGTGCCGTGTTTCTGGATCTGGAGCCAACTGTCATTGATGAAGTTCGAACCGGTACATATCGGCAGCTTTTTCACCCAGAGCAGCTGATCAGTGGCAAAGAAGATGCCGCCAACAACTTTGCTCGTGGCCATTATACCATTGGTAAGGAAATTGTGGATCTGTGCTTGGATCGAATCCGGAAGTTGGCAGACAACTGTACAGGCCTGCAAGGTTTCCTGGTCTTCCACGCTGTGGGAGGCGGTACCGGATCTGGTCTGGGGTCCCTTCTGTTGGAGAGGCTCTCTGTCGATTATGGAAAAAAATCGAAGTTGGGTTTCACTGTGTATCCATCTCCACAGGTCTCTACATCTGTAGTCGAGCCCTACAACAGCGTGCTGTCAACACACTCGCTGCTAGAGCATACAGATGTGGCCGTGCTGTTGGATAATGAGGCCATTTATGACATTTGTCGCCGTTCACTGGACATCGAGCGTCCCACATACACTAACCTTAATAGACTTGTATCTCAGGTCATATCTTCCCTTACTGCCTCTCTGCGTTTTGATGGTGCTCTGAACGTTGATGTGACTGAGTTCCAAACAAACTTGGTGCCGTATCCTCGTATTCATTTCATGCTTTCCTCGTATGCTCCTGTGATCTCTGCTGAGAAGGCCTACCACGAGCAGCTGTCAGTAGCTGAGATCACCAACAGTGCCTTCGAGCCATCGTCCATGATGGCTAAATGCGATCCGCGCCATGGCAAATACATGGCTTGCTGTCTCATGTACCGAGGGGATGTTGTGCCCAAGGACGTGAACGCGGCAGTAGCCACCATTAAGACCAAGAGGACCATTCAGTTCGTGGATGTTGCCCAGGTCCAGAGGGCCGTCTGTATGATTTCCAACTCGACCAGTGTAGCAGAGGTCTTCTCTCGTATTGATCATAAGTTCGATCTCATGTATGCCAAGCGTGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAGGAAGGAGAGTTCTCGGAGGCCCGTGAGGACTTGGCTGCTCTGGAGAAGGACTACGAAGAGGTCGGAGCAGAGTCTGCCGAGGGAGACGAGGATGAGGGCGAAGAGTACTGA___TCGATTATTAATTTCTATACTAAATGCTTGCTGCTAGTATACATTTATATGTTGTTTGGATTTGTGACATGTGTTGGTTTTTATGAATGGTAACCAATACTCATTGGTTTGATCTCCGTAGTACTGGTGGGGTAGTTTTCTGTTTATTCTATGATATCTACAATGATATTTCGTATATTTCGTTCTTTGCATTGCTGGATGTATCGACTCTCGCACTTGAATGCAGCTATTTATATCATGGTATCTGATATT

Fln Alignment:

sp_v1.1_unigene64217___AVTQFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFV----------------------DVAQVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
C0PQU1_______________AFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
665	75		25		0.996473
1286	20	80			0.999999
1287	25		75		1.0
1288	25			75	1.0
1290	25		75		1.0
1291	25			75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain