SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64210

Length: 1716 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene64210 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] emb\|CAB82947.1\| putative protein [Arabidopsis thaliana] gb\|ABP88117.1\| At3g62330 [Arabidopsis thaliana]	-	-	2.0e-15	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC27

Fln msg:

Fln protein: MLCEESRPFGRLRKIVRSNFSNVNNIESVV*KGCPTTLGVNRRSRAVAERTPSRDKNFKSRLSGAGGSRNQDFEKDSGRRFEHESHPGGGREAFYNTSRSDRARGSKSGGLNRRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRLQHNSGSQPYQGMGDVPPIDMDQRYGSSQADGRWKWEGARNGTNSVPPHLYKEGRGPSDPGSGNMSPSKVRGLDGASPYYHGQMPDIMPPEGSNILLKESDQKQEMDVGFADQSLPKSLEALEHRLMDDVMALVKDQNDADDEENARHQERTREIREQYQAKMVALRAQHAKRREDFFHHEMLSRVGQHQQPVLSKQYHEMAGGPMLGHDDHRGYGTSSLGEGHQVYPGGYESRRDEMQFYGNPPHSYNRTQSYDLREPYPGSRIYDSGQRYH*

Protein Length: 427

Fln nts: ATGGGGCGACTCCTAGTTTGCCCTAGAGCTCCTCTACCCGGAATTGTAATCCCCATTAAATTACGTCGTGACCTTGGCTGTCACTCAATTCTTCTTCCCCAGCGTCGGAGCGGAGAAGGAACAGCGGCAGGAG_-_ATGCTCTGTGAAGAGAGCAGACCCTTCGGGAGACTGCGGAAGATCGTACGTTCGAATTTCAGCAACGTCAACAACATCGAATCGGTCGTATAGAAGGGTTGTCCAACAACGTTGGGAGTAAACCGGAGGTCACGTGCAGTTGCTGAAAGAACCCCTTCAAGGGACAAAAATTTCAAATCACGTCTTTCTGGAGCTGGTGGTTCACGAAATCAGGATTTTGAGAAGGATAGTGGAAGACGGTTTGAACATGAAAGTCACCCTGGTGGAGGCCGTGAGGCTTTTTATAACACGTCCAGATCTGACAGGGCAAGGGGGTCGAAATCTGGAGGTTTAAACAGACGAGGTGAACAGGTTGAGGAATATAGAGACGAAAACATGGGTCGGCAGGGTTCTAACCGTGGATCAAACACAAATTCACTAGTGGCTGCTCAGATGCAGCATATAGCTGCTCAGAGATTGCAGCACAATTCTGGTTCACAGCCTTATCAAGGCATGGGAGATGTCCCACCCATTGACATGGATCAACGTTATGGGTCTTCCCAGGCAGATGGACGCTGGAAGTGGGAAGGTGCTCGTAATGGAACTAATTCTGTACCACCACACTTGTATAAAGAAGGAAGAGGTCCCTCAGATCCAGGCAGTGGAAACATGTCTCCATCTAAAGTTAGAGGGCTTGATGGAGCGAGTCCATACTATCATGGGCAGATGCCAGATATTATGCCACCAGAAGGTAGCAATATTCTACTGAAGGAGTCTGACCAGAAACAGGAAATGGATGTTGGGTTTGCTGATCAGTCTTTACCCAAATCATTGGAAGCATTGGAGCATAGACTGATGGATGATGTAATGGCTCTTGTAAAGGATCAAAATGATGCCGACGATGAGGAAAATGCAAGGCACCAGGAGCGCACGCGAGAGATTCGTGAACAATACCAGGCAAAGATGGTAGCCTTGAGAGCACAACATGCCAAGAGACGAGAAGATTTTTTTCACCATGAGATGCTATCACGAGTTGGGCAGCATCAACAACCAGTTCTTTCAAAACAATATCATGAAATGGCTGGTGGTCCAATGCTCGGTCATGATGATCATCGTGGCTATGGTACCAGCAGCCTTGGTGAAGGCCATCAGGTCTACCCTGGAGGGTATGAATCACGCAGAGATGAAATGCAGTTTTATGGCAATCCTCCACATTCTTACAATAGAACTCAGAGCTACGATTTGAGGGAACCATATCCTGGAAGTCGAATTTATGATTCTGGTCAGAGGTACCACTGA___AACGAGTGTTGACATACAGTTGCGGTAAATTACAAGTTTGAGGTTAGCAGTTTGCCTTTATAGTTTTCAGTGTTAAACATCCAGGCCATAGATTGCATTTGCTGCACTATTTTTATCTGGTATAACTTGAATAGTGTTTGATTTAGAAATGCCCAAACAAAGTGTTGGTCTTCAAAATTCAAGATGATGTCTGAAATATGCCCCTTGCCTATGGTCTGTTTCCTTACTTATCTAGTCTTGCTTTCATAAGTAAAACTTAATTTAAACATGTATTTGCTTTGTTGTATGATCTAGCATTTAAAAAT

Fln Alignment:

sp_v1.1_unigene64210___ESRPFGRLRKIVRSNFSNVNNIESVV*KGCPTTLGVNRRSRAVAERTPSRDKNFKSRLSGAGGSRNQDFEKDSGRRFEHESHPGGGREAFYNTSRSDRARGSKSGGLNRRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRLQHNSGSQPYQGMGDVPPIDMDQRYGSSQADGRWKWEGARNGTNSVPPHLYKEGRGPSDPGSGNMSPSKVRGLDGASPYYHGQMPDIMPPEGSNILLKESDQKQEMDVGFADQSLPKSLEALEHRLMDDVMALVKDQNDADDEENARHQERTREIREQYQAKMVALRAQHAKRREDFFHHEMLSRVGQHQQPVLSKQYHEMAGGPMLGHDDHRGYGTSSLGEGHQVYPGGYESRRDEMQFYGNPPHSYNRTQSYDLREPYPGSRIYDSGQRY
D5AC27_______________KSSSLGRRRKIARSNLSNVNDLDSFVSKGCPTTLGVNRRSRAVAERTTSRDKNFKARVSGPVASRNQDFEKDSGNRFEHESHSGGGRDAIYNTSRSDRVRGSKSLGFNKRGEQVEEYRDENMGRQGSNRGSNTNSLVAAQMQHIAAQRMQHNSSSQPYQGMADVPPMDMDQRYGSSQADGRWKWEGARNGTNSVPSHLYKEGRGPSDPSSGNISPSKVRGPDGASPYYHGQMPDIMPPEGSNVLLKDSDQKQEMDVGFADQSLPKSLEALEHKLMDEVMTLIKDQNDAEDEENARHRECTREIHEQYQAKIVALRTQHAKRREEFFRHELLSRVGQHQQPVLSKQFHETAGGPMLGHDDHRGYGT-GLGEGHQVYPGGYESRRDEMQYYGNPPHSYNRNQGYDIREPYPGSRMYDSAQRY

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
89	85	14			0.993533
147			12	87	0.992554
434	6		93		0.99903
486		10		90	1.0
567	8			92	0.999718
585	8	91			0.999766
591		16		79	1.0
597			17	82	1.0
598		82	17		1.0
602		18		81	1.0
604	18		81		1.0
605		18		81	1.0
607	9		90		0.999872
622	11		88		0.999937
628	11			88	0.999952
636		12		87	0.999964
656		83	16		0.999991
666		16	83		0.999991
667		16		83	0.999991
686		11	88		0.991528
688	11		88		0.991528
697		66		16	0.988813
698		20		80	0.995493
699		20	80		0.995493
700	20		80		0.995493
801	88			11	0.991528
1627		40	60		1.0
1628	30	70			1.0
1639		16	16		0.988814
1640		16	66		0.988814
1641		40	60		1.0
1642	16	16	66		0.988857
1643		16	66	16	0.98887
1645	80			20	0.995498
1653	33			66	0.997452
1656			66	33	0.997452
1657	33			66	0.997452
1659	66	33			0.997452
1665		66	33		0.997452
1669			66	33	0.997452
1671		66		33	0.997452
1672	66			33	0.997452
1673		66		33	0.997452
1674	25		75		0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain