SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64193

Length: 290 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene64193
CCAGCAGAGGCTGATTCTTTGCGGGAAAACAGCTCGAGGACGGACGCACTCTCGCAGATTACAACATCCAGAAGGAATCGACTCTTCAACCTTAAAGTTCTCCGTCTGAGAGGGGGAATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACAATCACTTTGGAGGTTGAGAGCTCAGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTCTGATCTTTGCGGAAGCAGCTCGAAGNTGGCCCGAACCTTGCTGACT

Ace file of the UniGene sp_v1.1_unigene64193

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	4.0e-30	100%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	0.0	100%
Blast2go	polyubiquitin	-	-	9.62955e-30	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	9.62955e-30	100%
Blast2go	response to UV-B	GO:0010224	Biological Process	9.62955e-30	100%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	9.62955e-30	100%
Blast2go	protein binding	GO:0005515	Molecular Function	9.62955e-30	100%
Blast2go	nucleolus	GO:0005730	Cellular Component	9.62955e-30	100%
Blast2go	vacuole	GO:0005773	Cellular Component	9.62955e-30	100%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	9.62955e-30	100%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, Distance to subject end: 551 aas, your sequence is shorter than subject: 97 - 761

Fln protein: SRG*FFAGKQLEDGRTLADYNIQKESTxxxxxVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFxRKQLEDGPNLAD

Protein Length: 98

Fln nts: CCAGCAGAGGCTGATTCTTTGCGGGAAAACAGCTCGAGGACGGACGCACTCTCGCAGATTACAACATCCAGAAGGAATCGACTCTxxxxxxxxxxxxAGTTCTCCGTCTGAGAGGGGGAATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACAATCACTTTGGAGGTTGAGAGCTCAGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTCTGATCTTTxxxCGGAAGCAGCTCGAAGaTGGCCCGAACCTTGCTGACT

Fln Alignment:

sp_v1.1_unigene64193___FAGKQLEDGRTLADYNIQKESTLxxxxVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAxKQLEDGPNLAD
Q41067_______________FAGKQLEDGRTLADYNIQKESTLxxxxVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAxKQLEDGRTLAD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain