SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64183

Length: 438 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene64183
ATGATATTAAGGTTGCATACAGAAGATTGGCACTGAAATACCACCCTGATGTCATGCCTATGCACCAGCTTGAGATAGCCACTGACAATTTTCTGAAATAAATCAGGCTTATGATACTCTGTCTGATCCACAAAAGAGAAAAGCATATGATGATCTACAACTAATACCCAAGTTTGACACTGCCAAGGCTGCAGCATCCCCATCCTCCTCATTTGGGCATTGGAGAGGAAGGAATTGGGAAACAGATCAATGTTGGTGTTGAGAGGGAATTATGACCATGTTTCTATTTCTAACTCCAGTGTCTGGATTTTGGTTATGTATTAGAGATGAATAAGACCTTTCAAGATCGTACCTTCCAGGGAAGGCAAATGGTCAAGATTTGTGATGAAATTTTCAGGCTGCTTGAATGTAATCTGGTACTCTGCTTTACTAAAATTT

Ace file of the UniGene sp_v1.1_unigene64183 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 11, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9S6N6_RICCO	-	-	5.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	chaperone protein dnaj chloroplast	-	-	7.10714e-34	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0K8

Fln msg: Overlapping hits, possible frame ERROR between 92 and 89, your sequence is shorter than subject: 87 - 180

Fln protein: DIKVAYRRLALKYHPDVMPMHQLEIATDxxxEINQAYDTLSDPQKRKAYDDLQLIPKFDTAKAAASPSSSFGHWRGRNWETDQCWC*

Protein Length: 88

Fln nts: ATGATATTAAGGTTGCATACAGAAGATTGGCACTGAAATACCACCCTGATGTCATGCCTATGCACCAGCTTGAGATAGCCACTGACxxxxxxxxxGAAATAAATCAGGCTTATGATACTCTGTCTGATCCACAAAAGAGAAAAGCATATGATGATCTACAACTAATACCCAAGTTTGACACTGCCAAGGCTGCAGCATCCCCATCCTCCTCATTTGGGCATTGGAGAGGAAGGAATTGGGAAACAGATCAATGTTGGTGTTGAGAGGGAATTATGACCATGTTTCTATTTCTAACTCCAGTGTCTGGATTTTGGTTATGTATTAGAGATGAATAAGACCTTTCAAGATCGTACCTTCCAGGGAAGGCAAATGGTCAAGATTTGTGATGAAATTTTCAGGCTGCTTGAATGTAATCTGGTACTCTGCTTTACTAAAATTT

Fln Alignment:

sp_v1.1_unigene64183___DIKVAYRRLALKYHPDVMPMHQLEIATDNxSEINQAYDTLSDPQKRKAYDDLQLIPKFDTAKAAASP-SSSFGHWRGRNWETDQCWC
A9P0K8_______________DIRVAYRRLALKYHPDVMPLHQLETATELxSEINKAYDTLSDPQKRKAYDDLYVIPNFETARAAACPSSSSFGHWRGRNWETDQCWC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain