SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64182

Length: 363 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene64182
AAGTCTGGGATCAATATCATCAAGCATTCTACAAGTCCTTGTTTCCATTCAAGGATTGGTCTAAATTCTAAGCCTTACTTTAATGAAGCCGGATATGACAAACAGATTGGTTCTGCTGAAGGGGAGAAGAACTCTCTAGCATACAGTGAAAACTCGTTTCTTTTATCATGCAAGTCAATGTTGTACATACTGCGCAGGCCCCCAAAGCATTTTGAAATGTTTGTCAAAGAGCATTTTAAAAAACGCGGTCATTATATTCTTCGTGCATTGTCGATGCATATATGAAAGGGGCTCAAGTCGGATCACTTTCAGAAGATTGCATGTTGCCATCAAATTCTGGGACAGTGTCTGAGAATCAGAATC

Ace file of the UniGene sp_v1.1_unigene64182

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UBC23; UBC23 (UBIQUITIN-CONJUGATING ENZYME 23); small conjugating protein ligase/ ubiquitin-protein ligase; K10581 ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19]	-	-	4.0e-26	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	ubiquitin-conjugating enzyme	-	-	6.09017e-27	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	4.0e-26	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphate ion homeostasis	GO:0055062	Biological Process	6.09017e-27	84%
Blast2go	protein metabolic process	GO:0019538	Biological Process	6.09017e-27	84%
Blast2go	phosphate ion transport	GO:0006817	Biological Process	6.09017e-27	84%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	6.09017e-27	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	6.09017e-27	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2M6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 43 aas, your sequence is shorter than subject: 36 - 108

Fln protein: MLYILRRPPKHFEMFVKEHFKKRGHYILRALSMHI*

Protein Length: 37

Fln nts: AAGTCTGGGATCAATATCATCAAGCATTCTACAAGTCCTTGTTTCCATTCAAGGATTGGTCTAAATTCTAAGCCTTACTTTAATGAAGCCGGATATGACAAACAGATTGGTTCTGCTGAAGGGGAGAAGAACTCTCTAGCATACAGTGAAAACTCGTTTCTTTTATCATGCAAGTCA_-_ATGTTGTACATACTGCGCAGGCCCCCAAAGCATTTTGAAATGTTTGTCAAAGAGCATTTTAAAAAACGCGGTCATTATATTCTTCGTGCATTGTCGATGCATATATGAAAGGGGCTCAAGTCGGATCACTTTCAGAAGATTGCATGTTGCCATCAAATTCTGGGACAGTGTCTGAGAATCAGAATC

Fln Alignment:

sp_v1.1_unigene64182___PKHFEMFVKEHFKKRGHYILRALSMHI
A9P2M6_______________PKHFESFVREHFHQRGHYILGACNAYM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain