SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64152

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene64152
TGGTGAAGCACAGAAAATTGACCGCATCACAGAAAAATTTGCAGAGCGCTACTGTAAGTGCAACCCAAAGGTTTTCACTAGTGCAGACACAGCTTATGTTCTTGCATACTCTGTGATCATGCTCAACACTGATGCACATAATCCAATGGTGAAGAATAAGATGTCGAAGGCAGATTTCATACGGAATAACCGAGGTATAGATGATGGAAAAGATTTACCAGAAGACTATATGGGATCCTTGTATGATCGTATTGTGAAAAATGAAATCAAGATGAAGGATGATAATTTGATGCCACAAAATAAACTTCCCACAAATGCAAACAGAATTTTAGGTCTAGATAGCATACTAAATATTGTAATTCGTAAAAGGGGGGAAGAAAAAGCTCTGGAGACGAGTGATGATCT

Ace file of the UniGene sp_v1.1_unigene64152 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5307 SEC7 domain proteins	-	-	2.0e-34	70%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	protein	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SEC7-like	IPR000904	-	0.0	88%
Blast2go	SEC7-like, alpha orthogonal bundle	IPR023394	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Distance to subject end: 660 aas, your sequence is shorter than subject: 134 - 1451

Fln protein: GEAQKIDRITEKFAERYCKCNPKVFTSADTAYVLAYSVIMLNTDAHNPMVKNKMSKADFIRNNRGIDDGKDLPEDYMGSLYDRIVKNEIKMKDDNLMPQNKLPTNANRILGLDSILNIVIRKRGEEKALETSDD

Protein Length: 135

Fln nts: TGGTGAAGCACAGAAAATTGACCGCATCACAGAAAAATTTGCAGAGCGCTACTGTAAGTGCAACCCAAAGGTTTTCACTAGTGCAGACACAGCTTATGTTCTTGCATACTCTGTGATCATGCTCAACACTGATGCACATAATCCAATGGTGAAGAATAAGATGTCGAAGGCAGATTTCATACGGAATAACCGAGGTATAGATGATGGAAAAGATTTACCAGAAGACTATATGGGATCCTTGTATGATCGTATTGTGAAAAATGAAATCAAGATGAAGGATGATAATTTGATGCCACAAAATAAACTTCCCACAAATGCAAACAGAATTTTAGGTCTAGATAGCATACTAAATATTGTAATTCGTAAAAGGGGGGAAGAAAAAGCTCTGGAGACGAGTGATGATCT

Fln Alignment:

sp_v1.1_unigene64152___GEAQKIDRITEKFAERYCKCNPKVFTSADTAYVLAYSVIMLNTDAHNPMVKNKMSKADFIRNNRGIDDGKDLPEDYMGSLYDRIVKNEIK
Q42510_______________GESQKIQRVLEAFSERYYMQSPEILANKDAALVLSYSIIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELFHSICNNEIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain