SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64109

Length: 337 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene64109
CGTGCAGATATTCTTATACACCCCCATCATTTGGAATAGCGAGAGACAAGCGACACTTCCCAAATGATGGGGTGTATAAGAATATCTGCACGTTGGGTGAATTAGCAACAATGCCTCAATGGACGACAGAAAAGCCCTTGCGAATTGCTACAGGATATACTCATCTGGGTAAAACGTTTGCAAAGGAGAAGGGACTAAAACATGTAACATTTTCGACAGCAGATGGGGCACTAGAAGCAGCTCCAGCGATGGGCATAGCTGTATGCCATTTTTGGACCTTGTGAGTAGTGGAACAACTTTGTCAGGAAAACAATCTCAAGGAATTAGAAGGTGGTGT

Ace file of the UniGene sp_v1.1_unigene64109

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]	-	-	2.0e-24	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	atp phosphoribosyl transferase	-	-	9.72436e-25	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	9.72436e-25	70%

Source	KEGGs	Term	e value	Identity
Blast2go	Histidine metabolism	00340	9.72436e-25	70%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	9.72436e-25	70%
Blast2go	Biosynthesis of plant hormones	01070	9.72436e-25	70%
Blast2go	Metabolic pathways	01100	9.72436e-25	70%
Blast2go	Biosynthesis of secondary metabolites	01110	9.72436e-25	70%

Source	ECs	Term	Type	e value	Identity
AutoFact	ATP phosphoribosyltransferase.	EC:2.4.2.17	-	2.0e-24	58%

Source	KEGGs	Term	e value	Identity
AutoFact	Histidine metabolism	00340	2.0e-24	58%
AutoFact	Biosynthesis of alkaloids derived from histidine and purine	01065	2.0e-24	58%
AutoFact	Biosynthesis of plant hormones	01070	2.0e-24	58%
AutoFact	Metabolic pathways	01100	2.0e-24	58%
AutoFact	Biosynthesis of secondary metabolites	01110	2.0e-24	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	9.72436e-25	70%
Blast2go	ATP phosphoribosyltransferase activity	GO:0003879	Molecular Function	9.72436e-25	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATP phosphoribosyltransferase HisG	IPR001348	-	9.72436e-25	70%
Blast2go	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	9.72436e-25	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 111 - 413

Fln protein: CRYSYTPPSFGIARDKRHFPNDGVYKNICTLGELATMPQWTTEKPLRIATGYTHLGKTFAKEKGLKHVTFSTADGALEAAPAMGIAVCHFWTL*VVEQLCQENNLKELEGG

Protein Length: 112

Fln nts: CGTGCAGATATTCTTATACACCCCCATCATTTGGAATAGCGAGAGACAAGCGACACTTCCCAAATGATGGGGTGTATAAGAATATCTGCACGTTGGGTGAATTAGCAACAATGCCTCAATGGACGACAGAAAAGCCCTTGCGAATTGCTACAGGATATACTCATCTGGGTAAAACGTTTGCAAAGGAGAAGGGACTAAAACATGTAACATTTTCGACAGCAGATGGGGCACTAGAAGCAGCTCCAGCGATGGGCATAGCTGTATGCCATTTTTGGACCTTGTGAGTAGTGGAACAACTTTGTCAGGAAAACAATCTCAAGGAATTAGAAGGTGGTGT

Fln Alignment:

sp_v1.1_unigene64109___FGIARDKRHFPNDGVYKNICTLGELATMPQWTTEKPLRIATGYTHLGKTFAKEKGLKHVTFSTADGALEAAPAMGIAVCHFWTL*VVEQLCQENNLKELEGG
B8LKY9_______________YGECRLSIAIPKYGIFQNISSMDELATMPEWTENRPLRITTGFTYLGPKFVKEKGLKHVKFSTADGALEAAPAMGIADA-ILDLVSSGTTLRENNLKEIKGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain