SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64088

Length: 411 nt

UniGene Fasta

>sp_v1.1_unigene64088
TTGGAAAATAACAAAAGATGGAGAAGATATCCTTATGGACACGAGGCCTTCAAAAGTGATTTCGAATGAAATAACTGTTTATGTAAAATGCTCTTTGCAATATGTGGATTTTGAGGGTCGTTCTGATGGACGCTCCATTAAATCAATCATTGGACACGTGGCACCTCTAAAGCTTGTTTTAGTTCATGGATCAGCTGAAGCTACAGAACACTTAAAAGCAACACTGCTTGAAGCATGTTACGTCCCATGTTTATGCTCCCCAGATTGAGGAAACAGTGGATGTAACATCAGATTTCTCTTCCTCCTTGTTTCCCACTTCTCCATCAATCCATGCTAACTCATGAGTAACGTGCTTTTTAAGAAGCTTGGTGACTATGAATTAGCATGGATTGATGGAGAAGTGGGAAACAA

Ace file of the UniGene sp_v1.1_unigene64088

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cleavage and polyadenylation specificity factor, putative	-	-	1.0e-29	58%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	55%
Blast2go	cleavage and polyadenylation specificity factor	-	-	1.07505e-31	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	1.07505e-31	68%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.07505e-31	68%
Blast2go	protein binding	GO:0005515	Molecular Function	1.07505e-31	68%
Blast2go	nucleus	GO:0005634	Cellular Component	1.07505e-31	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q652P4

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 136 - 738

Fln protein: WKITKDGEDILMDTRPSKVISNEITVYVKCSLQYVDFEGRSDGRSIKSIIGHVAPLKLVLVHGSAEATEHLKATLLEACYVPCLCSPD*GNSGCNIRFLFLLVSHFSINPC*LMSNVLFKKLGDYELAWIDGEVGN

Protein Length: 137

Fln nts: TTGGAAAATAACAAAAGATGGAGAAGATATCCTTATGGACACGAGGCCTTCAAAAGTGATTTCGAATGAAATAACTGTTTATGTAAAATGCTCTTTGCAATATGTGGATTTTGAGGGTCGTTCTGATGGACGCTCCATTAAATCAATCATTGGACACGTGGCACCTCTAAAGCTTGTTTTAGTTCATGGATCAGCTGAAGCTACAGAACACTTAAAAGCAACACTGCTTGAAGCATGTTACGTCCCATGTTTATGCTCCCCAGATTGAGGAAACAGTGGATGTAACATCAGATTTCTCTTCCTCCTTGTTTCCCACTTCTCCATCAATCCATGCTAACTCATGAGTAACGTGCTTTTTAAGAAGCTTGGTGACTATGAATTAGCATGGATTGATGGAGAAGTGGGAAACAA

Fln Alignment:

sp_v1.1_unigene64088___ILMDTRPSKVISNEITVYVKCSLQYVDFEGRSDGRSIKSIIGHVAPLKLVLVHGSAEATEHLKATLLEACYVPCLCSPD*GNSGCNIRFLFLLVSHFSINPC----*LMSNVLFKKLGDYELAWIDGEVG
Q652P4_______________LLLDSTPSKVISNEMTVQVKCSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLK--------MHCSKNSDLHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain