SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64065

Length: 381 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene64065
ATTGGGGAGGAAAAACCGAGATGAAGAGGATTGAGAAGACCAGCAGCAGGCAAGTTATGAGTTACGTGACTTTATTGTTTGGAGGATTAAAGAAAGAGGAGAGATCGGAATGGTGAGAGGAAAAACCGAGATGAAGAGGATTGAGAAGACCAGCAGCAGGCAAGTTATGTTTACTAAGCGTAGGAATGGTTTGCTGAAGAAAGCTTACGAGCTCTCGGTGCTCTGCGATGTGGAAATTGGACTTGTGGTTTTCTCTCCAAGAGGCAAGCTTCATGAATTCGCCAGTCCCAGGTATCTGTGCTTTTGTATTTGCCCTAGAAATACGATAGGCTGTTATTTGTTGATTGGCTGATCTGTTAACGGTCACAATAATATATAAGA

Ace file of the UniGene sp_v1.1_unigene64065

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA	-	-	2.0e-21	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	agamous-like mads box protein expressed	-	-	4.56215e-22	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKI1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 104 aas, your sequence is shorter than subject: 81 - 195

Fln protein: MVRGKTEMKRIEKTSSRQVMFTKRRNGLLKKAYELSVLCDVEIGLVVFSPRGKLHEFASPRYLCFCICPRNTIGCYLLIG*

Protein Length: 82

Fln nts: ATTGGGGAGGAAAAACCGAGATGAAGAGGATTGAGAAGACCAGCAGCAGGCAAGTTATGAGTTACGTGACTTTATTGTTTGGAGGATTAAAGAAAGAGGAGAGATCGGA_-_ATGGTGAGAGGAAAAACCGAGATGAAGAGGATTGAGAAGACCAGCAGCAGGCAAGTTATGTTTACTAAGCGTAGGAATGGTTTGCTGAAGAAAGCTTACGAGCTCTCGGTGCTCTGCGATGTGGAAATTGGACTTGTGGTTTTCTCTCCAAGAGGCAAGCTTCATGAATTCGCCAGTCCCAGGTATCTGTGCTTTTGTATTTGCCCTAGAAATACGATAGGCTGTTATTTGTTGATTGGCTGATCTGTTAACGGTCACAATAATATATAAGA

Fln Alignment:

sp_v1.1_unigene64065___MVRGKTEMKRIEKTSSRQVMFTKRRNGLLKKAYELSVLCDVEIGLVVFSPRGKLHEFASPR
A9NKI1_______________MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFASPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain