SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64023

Length: 412 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene64023
ATGGAGAAGCAGGTGCATGCCTTCCTTGTAGGTGATAAATCACACCCACAAACACACAAAATATATGCAGAGTTGCAGAGATTGTATCAAGAAATGAAGGTGGCAGGGTATGTTCCTGAGACGAAGTTTGTGTTGAATGACGTGAAGGAGGAAGAGAAGGAACACATTCTTCTTCACCATAGTGAAAAGCTTGCAATCGTATTTGGGCTAATAAACACACCACCTGGAACAACTATCCGAATCATTAAGAACCTTCGAGTGTGTGGTGACTGCCACTCTGCAAGCAAGTTTATCTCAAAGATGGTTGCACGAGAAATTATTTTGAGAGATCCCAATCGTTATCATCATATTAAGGACGGACATTGCTCTTGTCAGGATTACTGGTGATGATGGATGAAGCAAGCACAGAACC

Ace file of the UniGene sp_v1.1_unigene64023 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	3.0e-40	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	protein	-	-	1.6542e-40	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: your sequence is shorter than subject: 129 - 370

Fln protein: MEKQVHAFLVGDKSHPQTHKIYAELQRLYQEMKVAGYVPETKFVLNDVKEEEKEHILLHHSEKLAIVFGLINTPPGTTIRIIKNLRVCGDCHSASKFISKMVAREIILRDPNRYHHIKDGHCSCQDYW*

Protein Length: 130

Fln nts: ATGGAGAAGCAGGTGCATGCCTTCCTTGTAGGTGATAAATCACACCCACAAACACACAAAATATATGCAGAGTTGCAGAGATTGTATCAAGAAATGAAGGTGGCAGGGTATGTTCCTGAGACGAAGTTTGTGTTGAATGACGTGAAGGAGGAAGAGAAGGAACACATTCTTCTTCACCATAGTGAAAAGCTTGCAATCGTATTTGGGCTAATAAACACACCACCTGGAACAACTATCCGAATCATTAAGAACCTTCGAGTGTGTGGTGACTGCCACTCTGCAAGCAAGTTTATCTCAAAGATGGTTGCACGAGAAATTATTTTGAGAGATCCCAATCGTTATCATCATATTAAGGACGGACATTGCTCTTGTCAGGATTACTGGTGA___TGATGGATGAAGCAAGCACAGAACC

Fln Alignment:

sp_v1.1_unigene64023___MEKQVHAFLVGDKSHPQTHKIYAELQRLYQEMKVAGYVPETKFVLNDVXXXXXXXXXXXXXXXLAIVFGLINTPPGTTIRIIKNLRVCGDCHSASKFISKMVAREIILRDPNRYHHIKDGHCSCQDYW
A9P0W0_______________VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain