SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene64003

Length: 538 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene64003
CCCTAGACGAGGGTCACTGTCCCGCAGCTGATGGAGGTCCCTTGGTTCCGCCGGGGCTTCCAGCGCCCGCAGGCCGATAAAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCTGCGTTTTCCGTGCTGAAGCCGGCCTGCTTGAACGCCTTCGACATAATCTCCCTCTCGCCGAGATTTTTGAGGTCACTCCCTCGTTCTTCATGGTAGAGCTTCGGAAAACCGGCGGGGATACCCTGGAATACAGTAAGTTCTGCAGGCAAGATCTAAGGTCCGGCCTCAAAGACATTGTGTGGACATGGGATGGCACTAGACAGGAGAAATAATAAAATCATTGTTCAATTTCCCTGATTTGATTTGTATCGTTGGCATGTTATTTTTCTTAGAAAACAGTGTAGCCAGAACAGAGTAAATCTTGTGCTAGCGAGTAGGACTGCGAACCATATTTGAAGCCATGAAACCTTTACAATATGGAAGCCAAATAAGGAGTACCAGAGTACAACTTCTTTTCTTGTAAATTTGTAAAAGCAAATGA

Ace file of the UniGene sp_v1.1_unigene64003

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBL-interacting protein kinase 16 n=2 Tax=Vitis vinifera RepID=C4P7W5_VITVI	-	-	4.0e-15	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	cbl-interacting protein kinase 11	-	-	8.08605e-21	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9K4

Fln msg: Separated hits, possible frame ERROR between 165 and 174, your sequence is shorter than subject: 110 - 431

Fln protein: P*TRVTVPQLMEVPWFRRGFQRPQADKDVTVDLLDDVDSAFSVLKPACLNAFDIxxxxAEIFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRSGLKDIVWTWDGTRQEK*

Protein Length: 111

Fln nts: CCCTAGACGAGGGTCACTGTCCCGCAGCTGATGGAGGTCCCTTGGTTCCGCCGGGGCTTCCAGCGCCCGCAGGCCGATAAAGACGTCACTGTCGATCTCCTCGATGATGTTGACTCTGCGTTTTCCGTGCTGAAGCCGGCCTGCTTGAACGCCTTCGACATAATxxxxxxxxxCGCCGAGATTTTTGAGGTCACTCCCTCGTTCTTCATGGTAGAGCTTCGGAAAACCGGCGGGGATACCCTGGAATACAGTAAGTTCTGCAGGCAAGATCTAAGGTCCGGCCTCAAAGACATTGTGTGGACATGGGATGGCACTAGACAGGAGAAATAATAAAATCATTGTTCAATTTCCCTGATTTGATTTGTATCGTTGGCATGTTATTTTTCTTAGAAAACAGTGTAGCCAGAACAGAGTAAATCTTGTGCTAGCGAGTAGGACTGCGAACCATATTTGAAGCCATGAAACCTTTACAATATGGAAGCCAAATAAGGAGTACCAGAGTACAACTTCTTTTCTTGTAAATTTGTAAAAGCAAATGA

Fln Alignment:

sp_v1.1_unigene64003___P*TRVTVPQLMEVPWFRRGFQRPQAXXXXXXXXXXXXXSAFSVLKPACLNAFDIIxxxAEIFEVTPSFFMVELRKTGGDTLEYSKFCRQDLRSGLKDIVWTWDGTRQEK
D5A9K4_______________PRTRITVPQLMEVPWFRRGFKRPQADKDVNVGVLDDVDSAFFVPKPACLNAFDIIxxxAEIFEVTPSFFMVELRKTGGDTLEYSKFCSQDLRPGLKDIVWTWDGNRQEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain