SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63993

Length: 309 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63993
TTGTATAGCAGATTATCATGCAGGTTCAGTCAAGGCAATGGGTGCTACTGAGACGCATTATTTGCAATTACAAGATATAGTTCCAGAAGAAAATGTTGTATGGATTGATGCAAGTGATGGACTGTTCGATGCTTCAAGGCATTTTGCTGAGGTCAAGGTGGTTGGAATAGATTGTGAGTGGAGACCGAATTATTTGAAAGGAAAGGGGCCAAACAAGGTTTCTATTTTGCAGATTGCTACTGGAAGAAAGGTTTTCATATTTGACTTGATAAAACTATTTGAGACAGAAAAGGATGCATTGGATGACTG

Ace file of the UniGene sp_v1.1_unigene63993 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-5 exonuclease, putative	-	-	1.0e-19	56%
FL-Next	tr=3-5 exonuclease, putative; Ricinus communis (Castor bean).	-	-	0.0	56%
Blast2go	3 -5 exonuclease domain-containing protein	-	-	2.47424e-20	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	3'-5' exonuclease domain	IPR002562	-	2.47424e-20	69%
Blast2go	Ribonuclease H-like domain	IPR012337	-	2.47424e-20	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RFH0

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 102 - 570

Fln protein: CIADYHAGSVKAMGATETHYLQLQDIVPEENVVWIDASDGLFDASRHFAEVKVVGIDCEWRPNYLKGKGPNKVSILQIATGRKVFIFDLIKLFETEKDALDD

Protein Length: 103

Fln nts: TTGTATAGCAGATTATCATGCAGGTTCAGTCAAGGCAATGGGTGCTACTGAGACGCATTATTTGCAATTACAAGATATAGTTCCAGAAGAAAATGTTGTATGGATTGATGCAAGTGATGGACTGTTCGATGCTTCAAGGCATTTTGCTGAGGTCAAGGTGGTTGGAATAGATTGTGAGTGGAGACCGAATTATTTGAAAGGAAAGGGGCCAAACAAGGTTTCTATTTTGCAGATTGCTACTGGAAGAAAGGTTTTCATATTTGACTTGATAAAACTATTTGAGACAGAAAAGGATGCATTGGATGACTG

Fln Alignment:

sp_v1.1_unigene63993___YLQLQDIVPEENVVWIDASDGLFDASRHFAEVKVVGIDCEWRPNYLKGKGPNKVSILQIATGRKVFIFDLIKLFETEKDALDD
B9RFH0_______________FLQLNEFAVED-IVWVDEVDGLCGATGHIEGCKVVGLDCEWKPNFEKGSKPNKVSIMQIASDKMVFIFDLIKLFEDVPDTLDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain