SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63956

Length: 326 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene63956
GACAGAAATGATCGATATGCTAATCACAATACAGTCTTTTTTGATATCAATTTGAAGGGTTTGGATGGGATACAGGGGCCTGTTTATGTGGGCACAGGGTGCGTTTTCAACAGGCAAGCCCTCTATGGTTATGAGCCTCCTCACAAAGGTAAGATCCATTTTTCAAGCTGTTGTGGACCTAGAAAGAAGAGCAGAAAATCAAACAAGAAGTACAACGACACAAAAAAATTAGACAGGCCAACTGATTCAACTGTCCCCATATTCAGTAGTCTGGAAGACATAGAAGGAGGTGTGGAAGGATTTGATGATGAAAAATCCCCGCTGGT

Ace file of the UniGene sp_v1.1_unigene63956

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA	-	-	88%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	100%
Blast2go	cellulose synthase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	primary cell wall biogenesis	GO:0009833	Biological Process	77%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	77%
Blast2go	cellulose synthase activity	GO:0016759	Molecular Function	77%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 367 aas, your sequence is shorter than subject: 108 - 1096

Fln protein: DRNDRYANHNTVFFDINLKGLDGIQGPVYVGTGCVFNRQALYGYEPPHKGKIHFSSCCGPRKKSRKSNKKYNDTKKLDRPTDSTVPIFSSLEDIEGGVEGFDDEKSPL

Protein Length: 109

Fln nts: GACAGAAATGATCGATATGCTAATCACAATACAGTCTTTTTTGATATCAATTTGAAGGGTTTGGATGGGATACAGGGGCCTGTTTATGTGGGCACAGGGTGCGTTTTCAACAGGCAAGCCCTCTATGGTTATGAGCCTCCTCACAAAGGTAAGATCCATTTTTCAAGCTGTTGTGGACCTAGAAAGAAGAGCAGAAAATCAAACAAGAAGTACAACGACACAAAAAAATTAGACAGGCCAACTGATTCAACTGTCCCCATATTCAGTAGTCTGGAAGACATAGAAGGAGGTGTGGAAGGATTTGATGATGAAAAATCCCCGCTGGT

Fln Alignment:

sp_v1.1_unigene63956___DRNDRYANHNTVFFDINLKGLDGIQGPVYVGTGCVFNRQALYGYEPPHKGKIHFSSCCGPXXXXXXXXXXXXDTKKLDRPTDSTVPIFSSLEDIEGGVEGFDDEKSPL
Q4VWW7_______________DRNDRYANHNTVFFDINLKGLDGIQGPVYVGTGCVFNRQALYGYEPPHKGKIHFSSCCGPRKKSRKSNKKYNDTKKLDRPTDSTVPIFSSLEDIEGGVEGFDDEKSPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain