SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63942

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63942
CATTGAAAACCTTGCGGTTAACATACTGCGTAAAAATGAAGTCACTCCCCAGATTCCTTTGGTGATCTAAGAAAACCTCCGACGCATTGAACTCGGCCATTGCCAGAATCTGGAGAGGCTGCCAGAAACCTTCGGGAATTTAATCAAACTTAAATATCTTGACTTGGAGTGTTGCTCAAAGTTAACCATGTCCAGCGAAACACTCGGAAATATAAGCACGCTTCAGCACATAAATCTTGGGGGGTNCTGGAAGATTGAAGTATTGCCTCTCAAAATAACACAACAAAGGTCGCTGAAAGAGTTACATTTGTGGTATACAAATTTAAAAGAATTGCCAAATGCAATTGGAGAGCTAAGCAATTTGGAAAAACTGCATGTGGGAAGCCCTTTGCTGGACACGCTGCCTTCTTCGCTCGGTGACTTGAGCAACTTGAAGACATTGTCCCTGGACAAGTGCAACGAATTGAAATGTTTGCCGGATTCTATTGGACGGTTGACCCA

Ace file of the UniGene sp_v1.1_unigene63942 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=1 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	3.0e-22	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	5.85022e-38	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	5.85022e-38	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 199 aas, your sequence is shorter than subject: 166 - 482

Fln protein: IENLAVNILRKNEVTPQIPLVI*ENLRRIELGHCQNLERLPETFGNLIKLKYLDLECCSKLTMSSETLGNISTLQHINLGGFWKIEVLPLKITQQRSLKELHLWYTNLKELPNAIGELSNLEKLHVGSPLLDTLPSSLGDLSNLKTLSLDKCNELKCLPDSIGRLT

Protein Length: 167

Fln nts: CATTGAAAACCTTGCGGTTAACATACTGCGTAAAAATGAAGTCACTCCCCAGATTCCTTTGGTGATCTAAGAAAACCTCCGACGCATTGAACTCGGCCATTGCCAGAATCTGGAGAGGCTGCCAGAAACCTTCGGGAATTTAATCAAACTTAAATATCTTGACTTGGAGTGTTGCTCAAAGTTAACCATGTCCAGCGAAACACTCGGAAATATAAGCACGCTTCAGCACATAAATCTTGGGGGGTtCTGGAAGATTGAAGTATTGCCTCTCAAAATAACACAACAAAGGTCGCTGAAAGAGTTACATTTGTGGTATACAAATTTAAAAGAATTGCCAAATGCAATTGGAGAGCTAAGCAATTTGGAAAAACTGCATGTGGGAAGCCCTTTGCTGGACACGCTGCCTTCTTCGCTCGGTGACTTGAGCAACTTGAAGACATTGTCCCTGGACAAGTGCAACGAATTGAAATGTTTGCCGGATTCTATTGGACGGTTGACCCA

Fln Alignment:

sp_v1.1_unigene63942___NLRRIELGHCQNLERLPETFGNLIKLKYLDLECCSKLTMSSETLGNISTLQHINLGGFWKIEVLPLKITQQRSLKELHLWYTNLKELPNAIGELSNLEKLHVGSPLLDTLPSSLGDLSNLKTLSLDKCNELKCLPDSIGRLT
D5AB91_______________NLHHLDLSLCKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNIKELPSAIEVPTDLEVLWAGSPLLDTLYPLLGDLKNLKELRLKDCRELKCLPASVGRLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain