SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63865

Length: 276 nt

UniGene Fasta

>sp_v1.1_unigene63865
GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Ace file of the UniGene sp_v1.1_unigene63865

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase, putative (EC:3.2.1.21)	-	-	1.0e-33	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	protein	-	-	1.49881e-33	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	1.49881e-33	84%

Source	KEGGs	Term	e value	Identity
Blast2go	Starch and sucrose metabolism	00500	1.49881e-33	84%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	1.49881e-33	84%
Blast2go	Metabolic pathways	01100	1.49881e-33	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	xylan catabolic process	GO:0045493	Biological Process	1.49881e-33	84%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	1.49881e-33	84%
Blast2go	apoplast	GO:0048046	Cellular Component	1.49881e-33	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	1.49881e-33	84%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	1.49881e-33	84%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNI8

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 91 - 151

Fln protein: DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQVVSTEARGMYNVGLAGLTFWSPNVNLFS

Protein Length: 92

Fln nts: GGGATGCAGCTAGCGCCATTCCCAGACTCGGAATTCCAAAGTATGAATGGTGGTCTGAAGCTTTACATGGGGTGTCTAATGTAGGTCCCGGGACACGGTTCGCAGCACCAGTTCGTGGTGCTCTTGGTTTTCCTCAAGTCATTCTTACGGCTGCTTCCTTCAATGAGACTCTGTGGGAAACCATTGGTCAGGTGGTATCGACAGAGGCACGGGGCATGTATAACGTGGGGTTGGCAGGGCTGACGTTCTGGAGTCCCAACGTGAATCTATTCTCTG

Fln Alignment:

sp_v1.1_unigene63865___DAASAIPRLGIPKYEWWSEALHGVSNVGPGTRFAAPVRGALGFPQVILTAASFNETLWETIGQV
B8LNI8_______________NGASNISRLGIPMYEWWSEALHGVSDVGPGTRFGAPVPGATSFPQVILTAASFNDTLWEAIGRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain