SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63858

Length: 519 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene63858
AAAATCTGCTTTGTTATATGGCTGTTTCTTGAGCCTGATATGTTTTTGACACTGACCACTTGCTAACCTGCTGATTTCATTGGTTATTTAGTGGGATACTGCAGGACAGGAGCGATTCAGGACCATAACAAGCAGCTATTACCGCGGAGCTCACGGAATCATTGTAAGCAACAGTGAACTATTTAATATTAGATCTTTCAGACACTCCAATCGTGTATGAAGTTGTAAACTAAAAATATGCCTTTGGATCCAGTGTAAAAAGCTACAAATGAGTTCCATGGAATGTGATAATTATGCTTAACTGAAATGGTGTATATCCTGTACCTTTCTAATATATTATTTGATGCTAATAGATATTTAACCTTTGCTATCACAGATTGTTTATGATGTGACAGATATGGACAGTTTTAATAATGTCAAGCAATGGCTTAGTGAGATTGATAAATACGCAAGTGACAATGTGAGCAAACTTCTAGTAGGGAAACAAATGTGACTTGACAGAGAAACGAGCTGTTGATC

Ace file of the UniGene sp_v1.1_unigene63858

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTPase Rab1 n=6 Tax=Pinaceae RepID=B0LXL9_9CONI	-	-	3.0e-14	91%
FL-Next	tr=Rab1; Pinus pinaster (Maritime pine).	-	-	0.0	96%
Blast2go	ras-related protein	-	-	7.86674e-15	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q1WDE8

Fln msg: Overlapping hits, possible frame ERROR between 487 and 480, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 70 aas, your sequence is shorter than subject: 173 - 202

Fln protein: KSALLYGCFLSLICF*H*PLANLLISLVI*WDTAGQERFRTITSSYYRGAHGIIVSNSELFNIRSFRHSNRV*SCKLKICLWIQCKKLQMSSMECDNYA*LKWCISCTFLIYYLMLIDI*PLLSQIVYDVTDMDSFNNVKQWLSEIDKYASDNVSKLLVxxxxCDLTEKRAVD

Protein Length: 174

Fln nts: AAAATCTGCTTTGTTATATGGCTGTTTCTTGAGCCTGATATGTTTTTGACACTGACCACTTGCTAACCTGCTGATTTCATTGGTTATTTAGTGGGATACTGCAGGACAGGAGCGATTCAGGACCATAACAAGCAGCTATTACCGCGGAGCTCACGGAATCATTGTAAGCAACAGTGAACTATTTAATATTAGATCTTTCAGACACTCCAATCGTGTATGAAGTTGTAAACTAAAAATATGCCTTTGGATCCAGTGTAAAAAGCTACAAATGAGTTCCATGGAATGTGATAATTATGCTTAACTGAAATGGTGTATATCCTGTACCTTTCTAATATATTATTTGATGCTAATAGATATTTAACCTTTGCTATCACAGATTGTTTATGATGTGACAGATATGGACAGTTTTAATAATGTCAAGCAATGGCTTAGTGAGATTGATAAATACGCAAGTGACAATGTGAGCAAACTTCTAGTAxxxxxxxxxxxxTGTGACTTGACAGAGAAACGAGCTGTTGATC

Fln Alignment:

sp_v1.1_unigene63858___WDTAGQERFRTITSSYYRGAHGxxxCDLTEKRAVD
Q1WDE8_______________WDTAGQERFRTITSSYYRGAHGxxxCDLTEKQAVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain