SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63819

Length: 274 nt

UniGene Fasta

>sp_v1.1_unigene63819
GCTCCAATATTTGCTTGGCCGTTTGAGATTTAGAAAACGACGATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAAATTATGCAGACGGCAATTACGAAGCTCAAGAACTTTCTGGAACGGGAAGGAATTCCCGGAGAGCCATTCAATTCCGAGGAGTCCTGCATCTATTACACGACTATTTTCAACATGTGCACGCAAAAGCCTCCGCATGATTATTCGCTGCAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTA

Ace file of the UniGene sp_v1.1_unigene63819

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CUL1; cullin 1	-	-	6.0e-25	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein	-	-	1.96904e-25	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR74

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 77 - 310

Fln protein: MSERKIIELESGWEIMQTAITKLKNFLEREGIPGEPFNSEESCIYYTTIFNMCTQKPPHDYSLQLYDRYRESFEEYI

Protein Length: 78

Fln nts: GCTCCAATATTTGCTTGGCCGTTTGAGATTTAGAAAACGACG_-_ATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAAATTATGCAGACGGCAATTACGAAGCTCAAGAACTTTCTGGAACGGGAAGGAATTCCCGGAGAGCCATTCAATTCCGAGGAGTCCTGCATCTATTACACGACTATTTTCAACATGTGCACGCAAAAGCCTCCGCATGATTATTCGCTGCAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATTA

Fln Alignment:

sp_v1.1_unigene63819___TMSERKIIELESGWEIMQTAITKLKNFLEREGIPGEPFNSEESCIYYTTIFNMCTQKPPHDYSLQLYDRYRESFEEYI
A9NR74_______________TTSEREIIELEAGWEFMQKGITKLKNILE--GISEEQFNSEEYMRFYETVYKMCTQKPPHDYSQQLYDRYRESFEEYI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain