SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63809

Length: 421 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63809
GAGGAGGCCATCAAACTCTTTGGGCAAATGAACCGAGCAAGCATGAACATGGACCACTCAACTTTTGGAAGTGTTCTTAGTGCATTTGCTGATTTAGCAGTTGTGGAATATGGCAAACAGATACATGCCAAAATTATAAAAACCAGGTTTGAATTGGACGACTGTGTGGGTAATGCTGTGGTTGACATGTATGCCAAATGTGGGAGTATAGATGACGCTTGCCAACAGTTTAACAGAATGCATGTACGAGATAGGATTTCATGGACTGCATTGATCACAGGATACGCCCAAAATGGACGCAATGAAGAGGCCTTGAAACAATTTTGTCAGATGCTACAGACAAACATAAAGGCAAACCAGTTCACATTTGCAAGTATCCTCAGCGCATGTGCTAGCCTAGCGTCTTTGGAAAAGGGCAAGC

Ace file of the UniGene sp_v1.1_unigene63809 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	2.0e-24	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	pentatricopeptide repeat-containing	-	-	2.52806e-28	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.52806e-28	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD86

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 140 - 514

Fln protein: EEAIKLFGQMNRASMNMDHSTFGSVLSAFADLAVVEYGKQIHAKIIKTRFELDDCVGNAVVDMYAKCGSIDDACQQFNRMHVRDRISWTALITGYAQNGRNEEALKQFCQMLQTNIKANQFTFASILSACASLASLEKGK

Protein Length: 141

Fln nts: GAGGAGGCCATCAAACTCTTTGGGCAAATGAACCGAGCAAGCATGAACATGGACCACTCAACTTTTGGAAGTGTTCTTAGTGCATTTGCTGATTTAGCAGTTGTGGAATATGGCAAACAGATACATGCCAAAATTATAAAAACCAGGTTTGAATTGGACGACTGTGTGGGTAATGCTGTGGTTGACATGTATGCCAAATGTGGGAGTATAGATGACGCTTGCCAACAGTTTAACAGAATGCATGTACGAGATAGGATTTCATGGACTGCATTGATCACAGGATACGCCCAAAATGGACGCAATGAAGAGGCCTTGAAACAATTTTGTCAGATGCTACAGACAAACATAAAGGCAAACCAGTTCACATTTGCAAGTATCCTCAGCGCATGTGCTAGCCTAGCGTCTTTGGAAAAGGGCAAGC

Fln Alignment:

sp_v1.1_unigene63809___EEAIKLFGQMNRASMNMDHSTFGSVLSAFADLAVVEYGKQIHAKIIKTRFELDDCVGNAVVDMYAKCGSIDDACQQFNRMHVRDRISWTALITGYAQNGRNEEALKQFCQMLQTNIKANQFTF
D5AD86_______________DESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain