SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63807

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63807
TTAAAGGTGTTAGAAAGGATGCTAAGGTTCTGGGAAGTGGGGAATCAATAGTTGGAGGAATGCTGAAGATGGATGCTGTTACTGCAACAATACTTTATTGTCTGCCTGCCTCAGCATGTGATGTGTGACACTGAAGCAGTGCTAGGCTGAACAAATAGCTTGAGACTCTCTCAGAACTTGCGGTGCTCACTTTAATGGCAGGCTATCTCAACAGGTCAACTCAGGCTGTCATGGCAGCTTTCCTTTGGAATGTTTTTGTTGCTGCACTTTTATTCACACTACTTCATTGCAAGGGTTGCACTTCGTATTG

Ace file of the UniGene sp_v1.1_unigene63807 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate/malate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RID8_RICCO	-	-	1.0e-06	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVU0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 86 aas, your sequence is shorter than subject: 103 - 594

Fln protein: KGVRKDAKVLGSGESIVGGMLKMDAVTATILYCLPASACDV*H*SSARLNK*LETLSELAVLTLMAGYLNxxQLRLSWQLSFGMFLLLHFYSHYFIARVALRI

Protein Length: 104

Fln nts: TTAAAGGTGTTAGAAAGGATGCTAAGGTTCTGGGAAGTGGGGAATCAATAGTTGGAGGAATGCTGAAGATGGATGCTGTTACTGCAACAATACTTTATTGTCTGCCTGCCTCAGCATGTGATGTGTGACACTGAAGCAGTGCTAGGCTGAACAAATAGCTTGAGACTCTCTCAGAACTTGCGGTGCTCACTTTAATGGCAGGCTATCTCAACxxxxxxCAACTCAGGCTGTCATGGCAGCTTTCCTTTGGAATGTTTTTGTTGCTGCACTTTTATTCACACTACTTCATTGCAAGGGTTGCACTTCGTATTG

Fln Alignment:

sp_v1.1_unigene63807___IVGGMLKMDAVTATIL--------------YCLPASACDV*H*SSARLNK*LETLSELAVLTLMAGYLNRxxxxxxxxxxxxxxxGQLRLSWQLSFGMFLLLHFYSHYFIARVALRI
A9NVU0_______________IFGGMLKVDAVTAAILGLSVLLCTGVVTWKECLAESVA-------------WDTLTWFAALIAMAGYLNKxxxxxxxxxxxxxxxGGLGLSWQLSFGILVLLYFYSHYFFASGAAHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain