SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63805

Length: 288 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63805
GTTGTTAGACCAATTTATTTGTGAAGCATTAGCAAGTGTGGATGGTACAGAAAACTGCAAACCTATTTTATCAGGAAAGGACGTTTTTGTTCTTTATGACACTTATGGGTTTCCTGTAGAGATTACAAAAGAAGTTGCTGAAGAGAAAGGTGTAGCTGTAGATTTGCAAGAGTTTGAAGCTGAAATGGAAATTCAGAGGCAGAAGTCTCAGGCTGCTCACAATGTTGTTAAACTTTCAGTCGGGGGTGCTGTTTCAGAGCTTTTAAGTACAGTTTCCGAAACAGAGTT

Ace file of the UniGene sp_v1.1_unigene63805 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]	-	-	6.0e-22	60%
FL-Next	sp=Probable alanyl-tRNA synthetase, chloroplastic; Oryza sativa subsp. indica (Rice).	-	-	0.0	61%
Blast2go	alanyl-trna synthetase	-	-	4.46992e-25	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alanine--tRNA ligase.	EC:6.1.1.7	-	6.0e-22	60%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Aminoacyl-tRNA biosynthesis	00970		6.0e-22	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain	IPR018162	-	4.46992e-25	75%
Blast2go	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	4.46992e-25	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B8B4H5

Fln msg: Distance to subject end: 433 aas, your sequence is shorter than subject: 95 - 996

Fln protein: LLDQFICEALASVDGTENCKPILSGKDVFVLYDTYGFPVEITKEVAEEKGVAVDLQEFEAEMEIQRQKSQAAHNVVKLSVGGAVSELLSTVSETE

Protein Length: 96

Fln nts: GTTGTTAGACCAATTTATTTGTGAAGCATTAGCAAGTGTGGATGGTACAGAAAACTGCAAACCTATTTTATCAGGAAAGGACGTTTTTGTTCTTTATGACACTTATGGGTTTCCTGTAGAGATTACAAAAGAAGTTGCTGAAGAGAAAGGTGTAGCTGTAGATTTGCAAGAGTTTGAAGCTGAAATGGAAATTCAGAGGCAGAAGTCTCAGGCTGCTCACAATGTTGTTAAACTTTCAGTCGGGGGTGCTGTTTCAGAGCTTTTAAGTACAGTTTCCGAAACAGAGTT

Fln Alignment:

sp_v1.1_unigene63805___LLDQFICEALASVDGTENCKPILSGKDVFVLYDTYGFPVEITKEVAEEKGVAVDLQEFEAEMEIQRQKSQAAHNVVKLSVGGAVSELLSTVSETE
B8B4H5_______________LLDELLDEALSSA-GNNGGKPCLSGKDVFLLYDTYGFPVEITAEIAGERGVIVDMKGFDMEMENQRKQSQAAHNVVKLSVGNE-TEIVKSIPDTE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain