SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63788

Length: 503 nt

UniGene Fasta

>sp_v1.1_unigene63788
GTAGATTCGTTTAGAGTGAATGAGTGAATTAGCTATTGTAAAATTCTCTGGTGTGTGATGCAGAGTCATCATTCCCAGTCACTATTCTGTTGTCAACCGGCCACTCTATTTTTGTGAAAGGAGATCAAACAAATTTTGAAATTGGACCTGATGGTGTGGAGGCCAGTCAGCTCTACCCAGAGGTGAAATACACTACTGTGGAACAATATCTTAGCCAGTATATCTGAAGTTGATTGTGTGAGGTGCTTGGCTCAATTACGATGGTGGCAACCGTCTTTATCCAGTTTAGACAAGGCTGTTGCAATGTTTGGGCTTAATACAAGCATTAAGCAAAAGCTCACACTCAAGCAAAAGCTCACACTCAATTTAGTAGTAGACAGAAATGTGTCAAATAGCTCATAAGGTAGCTGAGGCCTTTGCTTTGTATATCAAGGGATTTGTATGTCTAGCCAAATGATCAATCAAAGTTAAGATAGTCATATCGTGACTTATGGGCACGTTTC

Ace file of the UniGene sp_v1.1_unigene63788

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phenylcoumaran benzylic ether reductase homolog TH6 n=4 Tax=Pinaceae RepID=Q9M523_TSUHE	-	-	7.0e-21	87%
FL-Next	tr=Phenylcoumaran benzylic ether reductase homolog TP5; Tsuga heterophylla (Western hemlock) (Abies heterophylla).	-	-	0.0	87%
Blast2go	isoflavone reductase-like protein	-	-	1.10843e-20	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M524

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 75 - 307

Fln protein: RFV*SE*VN*LL*NSLVCDAESSFPVTILLSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVEQYLSQYI*

Protein Length: 76

Fln nts: GTAGATTCGTTTAGAGTGAATGAGTGAATTAGCTATTGTAAAATTCTCTGGTGTGTGATGCAGAGTCATCATTCCCAGTCACTATTCTGTTGTCAACCGGCCACTCTATTTTTGTGAAAGGAGATCAAACAAATTTTGAAATTGGACCTGATGGTGTGGAGGCCAGTCAGCTCTACCCAGAGGTGAAATACACTACTGTGGAACAATATCTTAGCCAGTATATCTGA___AGTTGATTGTGTGAGGTGCTTGGCTCAATTACGATGGTGGCAACCGTCTTTATCCAGTTTAGACAAGGCTGTTGCAATGTTTGGGCTTAATACAAGCATTAAGCAAAAGCTCACACTCAAGCAAAAGCTCACACTCAATTTAGTAGTAGACAGAAATGTGTCAAATAGCTCATAAGGTAGCTGAGGCCTTTGCTTTGTATATCAAGGGATTTGTATGTCTAGCCAAATGATCAATCAAAGTTAAGATAGTCATATCGTGACTTATGGGCACGTTTC

Fln Alignment:

sp_v1.1_unigene63788___AESSFPVTILLSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVEQYLSQYI
Q9M524_______________AESPFPVNAMLSTGHSIFVKGDQTNFEIGPDGVEASQLYPEVKYTTVEEYLGQYV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain