SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene63730

Length: 399 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene63730
CTTTGGCGTCTTTGATGGTCATAACGGGAGGGACGCTGCAGTTTTCGCTGCCCAAAATATTGGGCAAAATATTGTAGATGCTATGCTCGGGTTGGGAGATGAAACAGAGAACACTCTCGAACAGGCCGTTAGAGCTGGATACTTGACGACAGATGCAGAGTTTTTGAAGCAGGAGGTTGGCAGCGGTACTGTTTGTGTCACTGCTCTAATTATTGATGGTAACTTAGTGGTTTCCAATGCTGGGGACTGTCGCGCAGTTATTAGCAGAAACGGTGCCTCTGAAGCTGTTACTTGTGATCATCGAGCTGGAAGGGACGACGAGCGACAACGGATAGAGAATTTGGGTGGAATTGTGGAGCACCGCCAGGGAGCTTGGCGAGTTCAGGAATCTCTAGCTGT

Ace file of the UniGene sp_v1.1_unigene63730 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9S5C5_RICCO	-	-	4.0e-37	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein phosphatase	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	76%
Blast2go	defense response to fungus	GO:0050832	Biological Process	76%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	76%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN4

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 132 - 449

Fln protein: FGVFDGHNGRDAAVFAAQNIGQNIVDAMLGLGDETENTLEQAVRAGYLTTDAEFLKQEVGSGTVCVTALIIDGNLVVSNAGDCRAVISRNGASEAVTCDHRAGRDDERQRIENLGGIVEHRQGAWRVQESLA

Protein Length: 133

Fln nts: CTTTGGCGTCTTTGATGGTCATAACGGGAGGGACGCTGCAGTTTTCGCTGCCCAAAATATTGGGCAAAATATTGTAGATGCTATGCTCGGGTTGGGAGATGAAACAGAGAACACTCTCGAACAGGCCGTTAGAGCTGGATACTTGACGACAGATGCAGAGTTTTTGAAGCAGGAGGTTGGCAGCGGTACTGTTTGTGTCACTGCTCTAATTATTGATGGTAACTTAGTGGTTTCCAATGCTGGGGACTGTCGCGCAGTTATTAGCAGAAACGGTGCCTCTGAAGCTGTTACTTGTGATCATCGAGCTGGAAGGGACGACGAGCGACAACGGATAGAGAATTTGGGTGGAATTGTGGAGCACCGCCAGGGAGCTTGGCGAGTTCAGGAATCTCTAGCTGT

Fln Alignment:

sp_v1.1_unigene63730___FGVFDGHNGRDAAVFAAQNIGQNIVDAMLGLGDETENTLEQAVRAGYLTTDAEFLKQEVGSGTVCVTALIIDGNLVVSNAGDCRAVISRNGASEAVTCDHRAGRDDERQRIENLGGIVEHRQGAWRVQESLA
B8LKN4_______________FGVFDGHSGRMAADFAAENMGQNIVDAMLSMGDEKEDIVEQAVRAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLGGIVDLRHGVWRVQGSLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain